RNA id: TU21860


Basic Information

Item Value
RNA id TU21860
length 247
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G16125
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 10659853 ~ 10660419 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ataaaagagacttcagatacagtattaggggaccactaaggtctatataaaagagacttcagatacagtattaggggaccactaaggcctatataaaagagacttctgatacagtattaggggaccactaaggtctatataaaagagacttcagatacagtattaggggaccactaaggtctatataagagacttcagatacagtattaggggaccactaaggtctatataaaagcatccaaagagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21826 lncRNA upstream 106093 10501531 ~ 10553760 (+) False G16115
TU21836 lncRNA upstream 106093 10501531 ~ 10553760 (+) True G16115
TU21843 lncRNA upstream 106093 10501531 ~ 10553760 (+) False G16115
TU21845 lncRNA upstream 106093 10501531 ~ 10553760 (+) False G16115
TU21829 lncRNA upstream 106436 10501531 ~ 10553417 (+) False G16115
TU21936 lncRNA downstream 355956 11016375 ~ 11016658 (+) True G16171
TU21941 lncRNA downstream 531731 11192150 ~ 11192454 (+) True G16176
TU21943 lncRNA downstream 598548 11258967 ~ 11259682 (+) True G16178
TU21945 lncRNA downstream 634428 11294847 ~ 11295519 (+) True G16180
TU21946 lncRNA downstream 635155 11295574 ~ 11295932 (+) True G16181
XM_039788464.1 mRNA upstream 195500 10455757 ~ 10464353 (+) True LOC120551211
XM_039782658.1 mRNA upstream 214364 10434485 ~ 10445489 (+) False LOC120547173
XM_039788488.1 mRNA downstream 316786 10977205 ~ 10979429 (+) True LOC120551226
XM_039791660.1 mRNA downstream 875366 11535785 ~ 11540819 (+) True LOC120553334
XM_039786653.1 mRNA downstream 894233 11554652 ~ 11562928 (+) True rps3
XM_039821761.1 mRNA downstream 904842 11565261 ~ 11573226 (+) True kctd14
XM_039787137.1 mRNA downstream 920027 11580446 ~ 11587261 (+) True LOC120550095
TU21270 other upstream 656258 10002250 ~ 10003595 (+) True G15712
TU21264 other upstream 694079 9960066 ~ 9965774 (+) False LOC120551195
TU21267 other upstream 694079 9960066 ~ 9965774 (+) False LOC120551195
TU21262 other upstream 715408 9885613 ~ 9944445 (+) False LOC120551195
unassigned_transcript_87 other upstream 775249 9884513 ~ 9884604 (+) True trnar-ucu_11
XR_005638446.1 other downstream 895888 11556307 ~ 11556455 (+) True LOC120554434
XR_005638451.1 other downstream 897033 11557452 ~ 11557600 (+) True LOC120554442
XR_005638440.1 other downstream 899972 11560391 ~ 11560539 (+) True LOC120554427
XR_005638430.1 other downstream 901837 11562256 ~ 11562404 (+) True LOC120554420
TU22150 other downstream 1234085 11894504 ~ 11900873 (+) True G16267

Expression Profile