RNA id: TU21948


Basic Information

Item Value
RNA id TU21948
length 414
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G16183
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 11297174 ~ 11297587 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ccctggtattaaaccattactgatggctgcattccacttaggagaggccctggtattaaaccattaatgatggctgcattccacttaggagagaccctggtattaaaccattactaatggctgcattccacttaggagagaccctggtattaaaccattaatgatggctgcattccacttaggagaggccctggtattaaaccattactgatggctgcattccacttaggagagaccctggtattaaaccattaatgatggctgcattccacttaggagagaccctagtattaaaccattactgatggctgcattccacttaggagaggtcctggtattaaaccattaatgatggctgcattccacttaggagaggccctggtattaaaccattactgatggctgcattccact

Function

GO:

id name namespace
GO:0007010 cytoskeleton organization biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21946 lncRNA upstream 1242 11295574 ~ 11295932 (+) True G16181
TU21945 lncRNA upstream 1655 11294847 ~ 11295519 (+) True G16180
TU21943 lncRNA upstream 37492 11258967 ~ 11259682 (+) True G16178
TU21941 lncRNA upstream 104720 11192150 ~ 11192454 (+) True G16176
TU21936 lncRNA upstream 280516 11016375 ~ 11016658 (+) True G16171
TU21950 lncRNA downstream 7694 11305281 ~ 11305511 (+) True G16185
TU21955 lncRNA downstream 48428 11346015 ~ 11346356 (+) True G16190
TU21957 lncRNA downstream 121027 11418614 ~ 11418881 (+) True G16192
XR_005637959.1 lncRNA downstream 129889 11427476 ~ 11442084 (+) False LOC120552116
TU21959 lncRNA downstream 129889 11427476 ~ 11442259 (+) True LOC120552116
XM_039788488.1 mRNA upstream 317745 10977205 ~ 10979429 (+) True LOC120551226
XM_039788464.1 mRNA upstream 832821 10455757 ~ 10464353 (+) True LOC120551211
XM_039782652.1 mRNA upstream 851685 10434486 ~ 10445489 (+) True LOC120547173
XM_039791660.1 mRNA downstream 238198 11535785 ~ 11540819 (+) True LOC120553334
XM_039786653.1 mRNA downstream 257065 11554652 ~ 11562928 (+) True rps3
XM_039821761.1 mRNA downstream 267674 11565261 ~ 11573226 (+) True kctd14
XM_039787137.1 mRNA downstream 282859 11580446 ~ 11587261 (+) True LOC120550095
XM_039787165.1 mRNA downstream 294841 11592428 ~ 11613222 (+) True LOC120550461
TU21270 other upstream 1293579 10002250 ~ 10003595 (+) True G15712
TU21264 other upstream 1331400 9960066 ~ 9965774 (+) False LOC120551195
TU21267 other upstream 1331400 9960066 ~ 9965774 (+) False LOC120551195
TU21262 other upstream 1352729 9885613 ~ 9944445 (+) False LOC120551195
unassigned_transcript_87 other upstream 1412570 9884513 ~ 9884604 (+) True trnar-ucu_11
XR_005638446.1 other downstream 258720 11556307 ~ 11556455 (+) True LOC120554434
XR_005638451.1 other downstream 259865 11557452 ~ 11557600 (+) True LOC120554442
XR_005638440.1 other downstream 262804 11560391 ~ 11560539 (+) True LOC120554427
XR_005638430.1 other downstream 264669 11562256 ~ 11562404 (+) True LOC120554420
TU22150 other downstream 596917 11894504 ~ 11900873 (+) True G16267

Expression Profile