RNA id: XR_005637959.1


Basic Information

Item Value
RNA id XR_005637959.1
length 552
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id LOC120552116
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 11427476 ~ 11442259 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTTGATGGAAAAACACATCGGAAAAGGGTGCGTGTTACATTCACCTCCATCTTCTGTTTGCACCCTTTAGAAGGCACAATATATCTCTGCCTCAGTTTTGCTGTAAGAAGAAACGTACGGATGAAAAGACACCACAGATTTAGACCCGTGTGTCCAGCAGGAAAGGGAGCGCCTGATAAGACAACAAGCTATACCTGAACCCCATTAACCTGTCCTATATATTTCCTATTGCTTGTAAGTAGCAAAGGAGCCATGGGACGAGACGAGGAGCTGTGTTCTTACCTAACAAGTAGAAAAGTGCCTCAAATGAGAAGGATTACGATATTTCTCTTGGCTGCAGAAATACAGGCTTTCTATCACTGAAACCTGGttctggtttgtttttttatcttcaaTGCTACTGAAAAGACTTGAAAAGACTTTTTTAAATGACACTTTTTCTCATGTAATATTGAAAGATATTAAAGGTACTTTTTTAAACTGTTACAGTTGAAGTTTCCCATCCTGagtataataaaaaatgaatttgGACATAAGATACTTGAGGTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21957 lncRNA upstream 8595 11418614 ~ 11418881 (+) True G16192
TU21955 lncRNA upstream 81120 11346015 ~ 11346356 (+) True G16190
TU21950 lncRNA upstream 121965 11305281 ~ 11305511 (+) True G16185
TU21948 lncRNA upstream 129889 11297174 ~ 11297587 (+) True G16183
TU21946 lncRNA upstream 131544 11295574 ~ 11295932 (+) True G16181
XR_005641426.1 lncRNA downstream 42528 11484612 ~ 11486070 (+) True LOC120572352
TU21972 lncRNA downstream 93004 11535088 ~ 11535301 (+) True G16207
TU22073 lncRNA downstream 247136 11689220 ~ 11771683 (+) True G16229
TU22079 lncRNA downstream 292314 11734398 ~ 11752981 (+) True G16235
TU22082 lncRNA downstream 312290 11754374 ~ 11812385 (+) True G16237
XM_039788488.1 mRNA upstream 448047 10977205 ~ 10979429 (+) True LOC120551226
XM_039788464.1 mRNA upstream 963123 10455757 ~ 10464353 (+) True LOC120551211
XM_039782652.1 mRNA upstream 981987 10434486 ~ 10445489 (+) True LOC120547173
XM_039791660.1 mRNA downstream 93701 11535785 ~ 11540819 (+) True LOC120553334
XM_039786653.1 mRNA downstream 112568 11554652 ~ 11562928 (+) True rps3
XM_039821761.1 mRNA downstream 123177 11565261 ~ 11573226 (+) True kctd14
XM_039787137.1 mRNA downstream 138362 11580446 ~ 11587261 (+) True LOC120550095
XM_039787165.1 mRNA downstream 150344 11592428 ~ 11613222 (+) True LOC120550461
TU21270 other upstream 1423881 10002250 ~ 10003595 (+) True G15712
TU21264 other upstream 1461702 9960066 ~ 9965774 (+) False LOC120551195
TU21267 other upstream 1461702 9960066 ~ 9965774 (+) False LOC120551195
TU21262 other upstream 1483031 9885613 ~ 9944445 (+) False LOC120551195
unassigned_transcript_87 other upstream 1542872 9884513 ~ 9884604 (+) True trnar-ucu_11
XR_005638446.1 other downstream 114223 11556307 ~ 11556455 (+) True LOC120554434
XR_005638451.1 other downstream 115368 11557452 ~ 11557600 (+) True LOC120554442
XR_005638440.1 other downstream 118307 11560391 ~ 11560539 (+) True LOC120554427
XR_005638430.1 other downstream 120172 11562256 ~ 11562404 (+) True LOC120554420
TU22150 other downstream 452420 11894504 ~ 11900873 (+) True G16267

Expression Profile