RNA id: TU21965


Basic Information

Item Value
RNA id TU21965
length 859
lncRNA type sense_over
GC content 0.50
exon number 3
gene id G16200
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 11487736 ~ 11507781 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tggttctcaaccttttttgtgccagcgcccccctatccattatccaggtccctaacgccccccatcaaatattatgtaggctaaatgccccgaatattaatgattacgccccaatataggcctattattgttgttactattgttatcaaaaataataaaaatacctttcccaggtatcaaaaagccatgtgaatagaaattatatatatttacaggttttaaagaaaaatgcaaccatttgacattcaaattaaataacagcagccaatcagaacgactagatatgtaacattcaaactataaataggtattatcaaaaggcttgctgcatggtgtgaacctcagcacctttagaagatgactataatttgaatgtccttttttgtttgtgaagtgaccttgggtgtcatgaaatgagctttaaataaaatgtattatgcttattattattattattacaaacactaacagtagccaatcagaaacagctagcaatttaacaatcaaatctatttttcattcaaatctaaaatcgaactgttccaacggaaaacaagctggcacttatcaaggggtaaaagcagaaggatcacacacacacacacacacacacacaagtattttggtgatgacaaacgacttgaagaacgacacctactgccgaatggaaataagtgtacaacctttgaaagttagtgagagccctttttttaatacttagaagagtctagctatgtttgctatcgcctgtcttgcgagtaaacgcaaccccacatcgcgctgtgttttgtggaggtgtgagagtcccgtacagtaaacagtgacatcactgcctctatctcttttctttctctctttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21958 lncRNA downstream 68840 11418490 ~ 11418896 (-) True G16193
TU21956 lncRNA downstream 122966 11364545 ~ 11364770 (-) True G16191
TU21954 lncRNA downstream 150761 11336771 ~ 11336975 (-) True G16189
XR_005638099.1 lncRNA downstream 163318 11320460 ~ 11324418 (-) True LOC120553105
TU21951 lncRNA downstream 182175 11305243 ~ 11305561 (-) True G16186
TU21971 lncRNA upstream 26847 11534628 ~ 11534839 (-) True G16206
TU22255 lncRNA upstream 62174 11569955 ~ 11571223 (-) True G16349
XR_005637593.1 lncRNA upstream 79093 11586874 ~ 11590216 (-) True LOC120550111
TU22261 lncRNA upstream 84335 11592116 ~ 11593657 (-) True G16355
TU22263 lncRNA upstream 86040 11593821 ~ 11594458 (-) True G16356
XM_039788477.1 mRNA downstream 920345 10493115 ~ 10567391 (-) True si:cabz01090165.1
XM_039824632.1 mRNA downstream 1134897 10342382 ~ 10352839 (-) True LOC120574326
XM_039788453.1 mRNA downstream 1145078 10257611 ~ 10342658 (-) True LOC120551206
XM_039788505.1 mRNA upstream 112890 11620671 ~ 11642942 (-) True gdpd4a
XM_039787149.1 mRNA upstream 192118 11699899 ~ 11793201 (-) False pak1
XM_039787151.1 mRNA upstream 192118 11699899 ~ 11793201 (-) False pak1
XM_039787147.1 mRNA upstream 192118 11699899 ~ 11793201 (-) True pak1
XM_039787150.1 mRNA upstream 192118 11699899 ~ 11743482 (-) False pak1
TU21879 other downstream 1062966 10422062 ~ 10424770 (-) True G16143
TU21797 other downstream 1156889 10326253 ~ 10330847 (-) False LOC120574316
TU21762 other downstream 1338165 10140176 ~ 10149571 (-) True G16064
TU21765 other downstream 1349389 10136688 ~ 10138347 (-) True G16066
XR_005638376.1 other downstream 1855708 9631923 ~ 9632028 (-) True LOC120554346
TU22339 other upstream 441556 11949337 ~ 11955578 (-) True G16407
TU22359 other upstream 481237 11989018 ~ 12033762 (-) True G16422
TU22426 other upstream 717278 12225059 ~ 12262775 (-) False G16458
XR_005638366.1 other upstream 979236 12487017 ~ 12487180 (-) True LOC120554324
XR_005638494.1 other upstream 981092 12488873 ~ 12489063 (-) True LOC120554526

Expression Profile