RNA id: TU22274


Basic Information

Item Value
RNA id TU22274
length 395
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G16366
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 11611538 ~ 11612015 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACCACAGAACAGCGTGTGCTGTGACTTCTGTGAATGAGGTCTAGAGAGGACCCATTTACTTGGCTGGTAGTAGTCGTAGATCTTGACCACGGCTGGCTTCAGGTTCTGCACTTGGTACTCCTGTACGAGCGTCAGGCTGTGGTTGATTCTTCGGTCCTTCTGTAACTCCGTATGTACACCAGAACATGATCCTCCTTTTGTTCAACACGATCCACCAGCAGGGCACCTTTGAGCTGTGAGGAGACATCAGCTGGGTTACCATGACAACTACTACAACTCCATTTAAAGTTATGGGAATCACTCACCATGTTCAAAGACTCTGGGTCTGGGACAAATCCGGAGAGCATTTTGATATCCAGGATAACCATGTTTGTACTGGACTCCTTTCCACTATA

Function

GO:

id name namespace
GO:0001510 RNA methylation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22263 lncRNA downstream 17080 11593821 ~ 11594458 (-) True G16356
TU22261 lncRNA downstream 17881 11592116 ~ 11593657 (-) True G16355
XR_005637593.1 lncRNA downstream 21322 11586874 ~ 11590216 (-) True LOC120550111
TU22255 lncRNA downstream 40315 11569955 ~ 11571223 (-) True G16349
TU21971 lncRNA downstream 76699 11534628 ~ 11534839 (-) True G16206
TU22291 lncRNA upstream 82251 11694266 ~ 11695980 (-) True G16377
TU22295 lncRNA upstream 98833 11710848 ~ 11720242 (-) True G16380
TU22298 lncRNA upstream 197908 11809923 ~ 11812376 (-) True G16383
TU22334 lncRNA upstream 232921 11844936 ~ 11853130 (-) True G16402
XR_005637750.1 lncRNA upstream 428009 12040024 ~ 12067403 (-) True LOC120550567
XM_039782975.1 mRNA downstream 110198 11496172 ~ 11501340 (-) True LOC120547527
XM_039788477.1 mRNA downstream 1044147 10493115 ~ 10567391 (-) True si:cabz01090165.1
XM_039824632.1 mRNA downstream 1258699 10342382 ~ 10352839 (-) True LOC120574326
XM_039824619.1 mRNA downstream 1280697 10318834 ~ 10330841 (-) False LOC120574316
XM_039788505.1 mRNA upstream 8656 11620671 ~ 11642942 (-) True gdpd4a
XM_039787149.1 mRNA upstream 87884 11699899 ~ 11793201 (-) False pak1
XM_039787151.1 mRNA upstream 87884 11699899 ~ 11793201 (-) False pak1
XM_039787147.1 mRNA upstream 87884 11699899 ~ 11793201 (-) True pak1
XM_039787150.1 mRNA upstream 87884 11699899 ~ 11743482 (-) False pak1
TU21879 other downstream 1186768 10422062 ~ 10424770 (-) True G16143
TU21797 other downstream 1280691 10326253 ~ 10330847 (-) False LOC120574316
TU21762 other downstream 1461967 10140176 ~ 10149571 (-) True G16064
TU21765 other downstream 1473191 10136688 ~ 10138347 (-) True G16066
XR_005638376.1 other downstream 1979510 9631923 ~ 9632028 (-) True LOC120554346
TU22339 other upstream 337322 11949337 ~ 11955578 (-) True G16407
TU22359 other upstream 377003 11989018 ~ 12033762 (-) True G16422
TU22426 other upstream 613044 12225059 ~ 12262775 (-) False G16458
XR_005638366.1 other upstream 875002 12487017 ~ 12487180 (-) True LOC120554324
XR_005638494.1 other upstream 876858 12488873 ~ 12489063 (-) True LOC120554526

Expression Profile