RNA id: TU22295


Basic Information

Item Value
RNA id TU22295
length 516
lncRNA type sense_over
GC content 0.42
exon number 2
gene id G16380
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 11710848 ~ 11720242 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctccctgttcagatgcaccaatcagggccaggggggtggtgtctaactgcgtgtcaatcactgctcatgcacacgcattcattctcccttgtaaggggggaggggcttaggagaccgttttgggctttagcagaaaggcggggagggactgagaagttgtcgatgttcacattctttggctaagtcctggatcttcacactcctacctacggcacctttaaatgACTCTGACCGCGTCTATTTCTCCAACAAAAGTACATACAAAGTCTTAATTGCACAGGTCTAACATGCAATGTTGTGTGTCCTGTGAATGATTTGGTCTATAAATAGTAATCGTCATCCCAGTGCTAATCTCCGAGTGCTAATTTTAGTCTCATTTACACCACACTTCTTATTTTTGGCATGCTGTTTCATCACTTTCtcttcatatacacacacacatacacacacacatacacacatacacacacacacacagacagacacacacacacacacacacacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22291 lncRNA downstream 14868 11694266 ~ 11695980 (-) True G16377
TU22274 lncRNA downstream 98833 11611538 ~ 11612015 (-) True G16366
TU22263 lncRNA downstream 116390 11593821 ~ 11594458 (-) True G16356
TU22261 lncRNA downstream 117191 11592116 ~ 11593657 (-) True G16355
XR_005637593.1 lncRNA downstream 120632 11586874 ~ 11590216 (-) True LOC120550111
TU22298 lncRNA upstream 89681 11809923 ~ 11812376 (-) True G16383
TU22334 lncRNA upstream 124694 11844936 ~ 11853130 (-) True G16402
XR_005637750.1 lncRNA upstream 319782 12040024 ~ 12067403 (-) True LOC120550567
TU22385 lncRNA upstream 394824 12115066 ~ 12227675 (-) False G16435
TU22416 lncRNA upstream 424808 12145050 ~ 12156278 (-) True G16451
XM_039788505.1 mRNA downstream 67906 11620671 ~ 11642942 (-) True gdpd4a
XM_039782975.1 mRNA downstream 209508 11496172 ~ 11501340 (-) True LOC120547527
XM_039788477.1 mRNA downstream 1143457 10493115 ~ 10567391 (-) True si:cabz01090165.1
XM_039824632.1 mRNA downstream 1358009 10342382 ~ 10352839 (-) True LOC120574326
XM_039824611.1 mRNA downstream 1380007 10318834 ~ 10330841 (-) True LOC120574316
XM_039787145.1 mRNA upstream 93037 11813279 ~ 11865934 (-) True capn5a
XM_039787159.1 mRNA upstream 167247 11887489 ~ 11906289 (-) False dcun1d5
XM_039787155.1 mRNA upstream 167247 11887489 ~ 11906289 (-) False dcun1d5
XM_039787156.1 mRNA upstream 167247 11887489 ~ 11906112 (-) True dcun1d5
XM_039787154.1 mRNA upstream 266173 11986415 ~ 12006431 (-) True LOC120550316
TU21879 other downstream 1286078 10422062 ~ 10424770 (-) True G16143
TU21797 other downstream 1380001 10326253 ~ 10330847 (-) False LOC120574316
TU21762 other downstream 1561277 10140176 ~ 10149571 (-) True G16064
TU21765 other downstream 1572501 10136688 ~ 10138347 (-) True G16066
XR_005638376.1 other downstream 2078820 9631923 ~ 9632028 (-) True LOC120554346
TU22339 other upstream 229095 11949337 ~ 11955578 (-) True G16407
TU22359 other upstream 268776 11989018 ~ 12033762 (-) True G16422
TU22426 other upstream 504817 12225059 ~ 12262775 (-) False G16458
XR_005638366.1 other upstream 766775 12487017 ~ 12487180 (-) True LOC120554324
XR_005638494.1 other upstream 768631 12488873 ~ 12489063 (-) True LOC120554526

Expression Profile