RNA id: TU22334


Basic Information

Item Value
RNA id TU22334
length 242
lncRNA type intronic
GC content 0.58
exon number 2
gene id G16402
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 11844936 ~ 11853130 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtgttcaggtgcattctggggcgtgctggtcttacagggaggtgtgttcaggtgcattctggggcgtgctggtcttacagggaggtgtgttcaggtgcattctgggcgtgctggtcttacagggaggtgtgttcaggtgcattctgggcgcgctggtcttacagggaggtgtgttcaggtgcattctgggcgtgctggtcttacagggaggtgtgttcaggtgcattctgggcgtgctgg

Function

GO:

id name namespace
GO:0030594 neurotransmitter receptor activity molecular_function

KEGG:

id description
ko04020 Calcium signaling pathway
ko04080 Neuroactive ligand-receptor interaction
ko04713 Circadian entrainment

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22298 lncRNA downstream 32560 11809923 ~ 11812376 (-) True G16383
TU22295 lncRNA downstream 124694 11710848 ~ 11720242 (-) True G16380
TU22291 lncRNA downstream 148956 11694266 ~ 11695980 (-) True G16377
TU22274 lncRNA downstream 232921 11611538 ~ 11612015 (-) True G16366
TU22263 lncRNA downstream 250478 11593821 ~ 11594458 (-) True G16356
XR_005637750.1 lncRNA upstream 186894 12040024 ~ 12067403 (-) True LOC120550567
TU22385 lncRNA upstream 261936 12115066 ~ 12227675 (-) False G16435
TU22416 lncRNA upstream 291920 12145050 ~ 12156278 (-) True G16451
XR_005637747.1 lncRNA upstream 299244 12152374 ~ 12153862 (-) True LOC120550557
TU22417 lncRNA upstream 299245 12152375 ~ 12153736 (-) False LOC120550557
XM_039787149.1 mRNA downstream 51735 11699899 ~ 11793201 (-) False pak1
XM_039787151.1 mRNA downstream 51735 11699899 ~ 11793201 (-) False pak1
XM_039787147.1 mRNA downstream 51735 11699899 ~ 11793201 (-) True pak1
XM_039787150.1 mRNA downstream 101454 11699899 ~ 11743482 (-) False pak1
XM_039788505.1 mRNA downstream 201994 11620671 ~ 11642942 (-) True gdpd4a
XM_039787159.1 mRNA upstream 34359 11887489 ~ 11906289 (-) False dcun1d5
XM_039787155.1 mRNA upstream 34359 11887489 ~ 11906289 (-) False dcun1d5
XM_039787156.1 mRNA upstream 34359 11887489 ~ 11906112 (-) True dcun1d5
XM_039787154.1 mRNA upstream 133285 11986415 ~ 12006431 (-) True LOC120550316
XM_039787143.1 mRNA upstream 225076 12078206 ~ 12099187 (-) True ints4
TU21879 other downstream 1420166 10422062 ~ 10424770 (-) True G16143
TU21797 other downstream 1514089 10326253 ~ 10330847 (-) False LOC120574316
TU21762 other downstream 1695365 10140176 ~ 10149571 (-) True G16064
TU21765 other downstream 1706589 10136688 ~ 10138347 (-) True G16066
XR_005638376.1 other downstream 2212908 9631923 ~ 9632028 (-) True LOC120554346
TU22339 other upstream 96207 11949337 ~ 11955578 (-) True G16407
TU22359 other upstream 135888 11989018 ~ 12033762 (-) True G16422
TU22426 other upstream 371929 12225059 ~ 12262775 (-) False G16458
XR_005638366.1 other upstream 633887 12487017 ~ 12487180 (-) True LOC120554324
XR_005638494.1 other upstream 635743 12488873 ~ 12489063 (-) True LOC120554526

Expression Profile