RNA id: TU22416


Basic Information

Item Value
RNA id TU22416
length 229
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G16451
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 12145050 ~ 12156278 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTTGTAAAGAGGAAACTAATCTAAAGTAACCAACATAAATAAAGTATAAAGCCATCAGCTCAAAATTACCCGTTTGTCCTGGGAGGTAGATTGGTTTATCCGTTTGGATGAAGGTCATTGGTCGATAGACTTTGATCTTAACTTTTCGGACTTCTTTAGAGTAGAACGTGTCGCCTCGTACCTCCACCTCAAAGTCCTGCACCACTTCATCCTGCACTAAAGGAACCT

Function

GO:

id name namespace
GO:0009186 deoxyribonucleoside diphosphate metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005637750.1 lncRNA downstream 77647 12040024 ~ 12067403 (-) True LOC120550567
TU22334 lncRNA downstream 291920 11844936 ~ 11853130 (-) True G16402
TU22298 lncRNA downstream 332674 11809923 ~ 11812376 (-) True G16383
TU22295 lncRNA downstream 424808 11710848 ~ 11720242 (-) True G16380
TU22291 lncRNA downstream 449070 11694266 ~ 11695980 (-) True G16377
TU22399 lncRNA upstream 1019 12157297 ~ 12222732 (-) True G16437
TU22396 lncRNA upstream 1514 12157792 ~ 12260324 (-) False G16437
TU22400 lncRNA upstream 1514 12157792 ~ 12222732 (-) False G16437
TU22377 lncRNA upstream 4465 12160743 ~ 12265727 (-) True G16435
TU22390 lncRNA upstream 4465 12160743 ~ 12162117 (-) False G16435
XM_039787146.1 mRNA downstream 30601 12106269 ~ 12114449 (-) True LOC120550222
XM_039787143.1 mRNA downstream 45863 12078206 ~ 12099187 (-) True ints4
XM_039787154.1 mRNA downstream 138619 11986415 ~ 12006431 (-) True LOC120550316
XM_039787155.1 mRNA downstream 238761 11887489 ~ 11906289 (-) False dcun1d5
XM_039787161.1 mRNA upstream 41825 12198103 ~ 12199664 (-) False LOC120550388
XM_039787160.1 mRNA upstream 41825 12198103 ~ 12199660 (-) True LOC120550388
XM_039782925.1 mRNA upstream 132379 12288657 ~ 12386040 (-) False myo7aa
XM_039782926.1 mRNA upstream 132379 12288657 ~ 12386008 (-) False myo7aa
XM_039782924.1 mRNA upstream 132379 12288657 ~ 12373160 (-) False myo7aa
TU22359 other downstream 111288 11989018 ~ 12033762 (-) True G16422
TU22339 other downstream 189472 11949337 ~ 11955578 (-) True G16407
TU21879 other downstream 1720280 10422062 ~ 10424770 (-) True G16143
TU21797 other downstream 1814203 10326253 ~ 10330847 (-) False LOC120574316
TU21762 other downstream 1995479 10140176 ~ 10149571 (-) True G16064
TU22426 other upstream 68781 12225059 ~ 12262775 (-) False G16458
XR_005638366.1 other upstream 330739 12487017 ~ 12487180 (-) True LOC120554324
XR_005638494.1 other upstream 332595 12488873 ~ 12489063 (-) True LOC120554526
XR_005638489.1 other upstream 333572 12489850 ~ 12490013 (-) True LOC120554512
XR_005638506.1 other upstream 343705 12499983 ~ 12500146 (-) True LOC120554552

Expression Profile