RNA id: TU22449


Basic Information

Item Value
RNA id TU22449
length 2442
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G16464
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 12413499 ~ 12415940 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTGGGATGTTGGTTTTAATAACTTAGAAAACATTTATGTTACAGCAATACTACAGTAACAGTACAACAGAGAAATGGAAGGAGCCACATTCACATCCAGTGGTGCCTGTTTGAATGCAGATTAAGTCGgactgaacattttaaaaccaaCGGATTCTGCCACAGAGCCGAACACAGATGCACACCAGGTTCAGTGGAATGATTTGGGACCGGTGGCATAAACACATTAATCTCAAATCTGGAGTAACAGTCCGAGTACTCTAAAAGGGTTGGTTCTGCCTCAGTGTAACCTAAATTAAAATCTTTAGGGGGCTGCAGTCTTATCTTTTGAGTACCGAGAGTCCAGTTGAGCTGATAAATGATATAAACGATATAAAATCACCATGATGATCAAGAGGCTGCACGGCCACATTAAGGGGATTTTCCAAAAACAGCCTTTTTATTAAATCTAGAGGTTGTATTTGCGATGAGATAACCCATGCTTAGAAAGTAAACCAGCTAATGAGCATttttagattcttttttttttttatttaatttttttttttaaacaaaggaGTCCCACAACACCTGAACCACTTTAGGAAAGTACCTGAAAGAACATCTAGTAATTTAACCGGCTGTGAACTTCAAACGTCTAGAGCCCACTTTTATCTAAAAGTGAGCGAGCAAGGCCAGTATGTAAAAGTAATTCCAGTTATCAATTCAACAATTAAATCTTATTTAATGCTTTTGGCAAACTGAGAAGTTCCACTGCACAAATCATGCATTTGTGACCCAAaactaaagatttttttttattttttaaaaaggtgatAATTTTCAGATTTTTCTTCCCCTCTCAACGTCTCCAAAGCTAAATGTAAACCACTGATATAATCTGAGATATAGACTTGATTTCTGTTTAAATCATTACAGTATGTTCTTCAAAAGGTACCATAAAGGATACTGTCAAACAACATTTGTCCTGACTAAAGTTTCAGACCATGATCTAATTATTAGGATTAGTGGTAAAGGTCTCTACGGTTGTTGAACTACAGCTTTCACATCGTTAAGATAAGATTGGTACATTCAGGCAACGATAATTAAGTGCCTGACTCACTAAAAAGTTTtttgaaatgaaacaaaagTAGGAAAAGAAATGAACTTCCTTCTTATCTGACGGTTTCTCTTTATGTGCATTTTTCCCCCCCTACATGTTCTGCTCTCTGAGAAGTGACAGAAGCATCTTCCCACGTATGTTATGTTACAAAATACACTTTTGGTGGCCATAAACTCTGCACAGAAAACACTTCTTAAAAAGAGAATCGCACCAACATCGTCCTTCAACTCTTTACCGTATAAAAGTAGATGTTTTTCAAATGGATGACTGGCTTTGTTTTCGTCGGGTGTCCTAAGGTTTGGGACATCTTAAAGGGATATgtcaccgtttgttgaaatagtttttatcacagtctcccctagctgtagatagggggggccaacgcattttgtgtgcatgcattgttttagtccggtgcaacaccggcagcgccgccgctagttagcttagcgtagtgaatggaatcctatgttgccggttagcatgttgtgagtaaaagtgagccaacaaaagacaaaaaaaaacaacctaattacttgcactgagacaaaaaaatgcgttggcccacctatccacagccaggggagaccgtgataagaactatttcaacaaactgtggagtatccctttaagataaagaaagaaaagaacgcCTTGTTTGAAACCTGGCTGGTTTGAGGAGCATTACAGGAATGATATTTGCATTtagtttctttaaaaacaaacgtATGTCAGAAAGCTTCCAACGTTGGTAAGAGAGTGAAGTAACTTGGACGAAGCCCAATTCAAATATAATCATACTTGAATGTTTTTTGGGAACTTCAGCTGAGTGCTGTTGTGTTTGGAGCCAGGACtctttttgaaaatgaagaGAAACTCTGCAGCATCTCCCATCTCGTCAGATCACAGCTGCAGTCTGATCTGGGCCCGTATTTATCAAAACTGCTAATAGTGACATTTGGGATTTAAGATTAAAAGTAACAATCCTTTACTTCTGCTCCTGAATATCCTTAAAAACTATTCAGAACATTTCTTATGACTTAAAAATGCATCTTCTGAGACACATTTTTAGTGATTGTAGAAATAATTTGTGTGAATTTGTTAGCGGAGGAAATATTTATAATTCTGAATCCTGTAGTTTTAGCCGGTTTTCATTGGATTGTCTGAACTTGTCAATGCTATAAGTAGTTCTCCTTAATATGAGTTTTCTCTGATGTACAATTTAGTTCCCGCttcagtttagtttttgttgtttccaTAAAAGTGAATTTCCAattatttcatatatatatatatatatatatatatatatatatatatatatatatatatatatatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22454 lncRNA upstream 12492 12395995 ~ 12401007 (+) False G16467
XR_005637745.1 lncRNA upstream 212608 12199794 ~ 12200891 (+) True LOC120550541
XR_005637746.1 lncRNA upstream 212608 12199794 ~ 12200891 (+) False LOC120550541
XR_005637735.1 lncRNA upstream 278340 12132408 ~ 12135159 (+) False LOC120550493
TU22444 lncRNA downstream 70 12416010 ~ 12420722 (+) False G16463
TU22446 lncRNA downstream 70 12416010 ~ 12420722 (+) True G16463
TU22474 lncRNA downstream 50515 12466455 ~ 12466745 (+) True G16484
TU22503 lncRNA downstream 151854 12567794 ~ 12568464 (+) True G16511
TU22570 lncRNA downstream 192573 12608513 ~ 12609663 (+) True G16559
XM_039792741.1 mRNA upstream 19661 12388572 ~ 12393838 (+) True aqp11
XM_039787166.1 mRNA upstream 139676 12255637 ~ 12273823 (+) True LOC120550477
XM_039787138.1 mRNA upstream 177748 12218910 ~ 12235751 (+) True LOC120550122
XM_039787142.1 mRNA upstream 239803 12153864 ~ 12173696 (+) True LOC120550138
XM_039789669.1 mRNA downstream 26190 12442130 ~ 12456583 (+) True LOC120552034
XM_039789679.1 mRNA downstream 26190 12442130 ~ 12456583 (+) False LOC120552034
XM_039790737.1 mRNA downstream 153189 12569129 ~ 12573338 (+) True LOC120552565
XM_039790759.1 mRNA downstream 171673 12587613 ~ 12614479 (+) True cep295
XM_039790774.1 mRNA downstream 171673 12587613 ~ 12614479 (+) False cep295
TU22453 other upstream 4225 12395995 ~ 12409274 (+) True G16467
TU22150 other upstream 512626 11894504 ~ 11900873 (+) True G16267
XR_005638430.1 other upstream 851095 11562256 ~ 11562404 (+) True LOC120554420
XR_005638440.1 other upstream 852960 11560391 ~ 11560539 (+) True LOC120554427
XR_005638451.1 other upstream 855899 11557452 ~ 11557600 (+) True LOC120554442
TU22469 other downstream 35565 12451505 ~ 12456399 (+) False LOC120552034
XR_005638517.1 other downstream 206857 12622797 ~ 12622987 (+) True LOC120554572
XR_005638490.1 other downstream 214734 12630674 ~ 12630864 (+) True LOC120554522
TU22608 other downstream 452932 12868872 ~ 12922469 (+) False G16590
TU22611 other downstream 452932 12868872 ~ 12922469 (+) False G16590

Expression Profile