RNA id: TU22474


Basic Information

Item Value
RNA id TU22474
length 291
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G16484
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 12466455 ~ 12466745 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gaaaaacatttttatattctaaaataatttcttgctcCTTCGCGGAAAAATATATTGCTCTCGCTCTATCCATATCGAACGTGATTGGTTGTTCGGTGCCGACGTCACTCTTTTATGTGCACGCGCGCGGGGAGTAATCAGAGTTTGAGGATCAAAGCCTGAGTTAACAGAGAAAGTTGATAAGCTGCGTCATGGTACCAATAGAGCCTGATTGCATCGGTTTGGTTTTGTCAACTCTAAACCAATCCTGCAACCCTGAGTTTGTTCAACTACCATCATGGTACAGGCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22444 lncRNA upstream 45733 12416010 ~ 12420722 (+) False G16463
TU22446 lncRNA upstream 45733 12416010 ~ 12420722 (+) True G16463
TU22449 lncRNA upstream 50515 12413499 ~ 12415940 (+) True G16464
TU22448 lncRNA upstream 50608 12413499 ~ 12415847 (+) False G16464
TU22454 lncRNA upstream 65448 12395995 ~ 12401007 (+) False G16467
TU22503 lncRNA downstream 101049 12567794 ~ 12568464 (+) True G16511
TU22570 lncRNA downstream 141768 12608513 ~ 12609663 (+) True G16559
TU22582 lncRNA downstream 170448 12637193 ~ 12640466 (+) True G16566
TU22584 lncRNA downstream 174937 12641682 ~ 12646018 (+) True G16568
TU22586 lncRNA downstream 181229 12647974 ~ 12651118 (+) True G16570
XM_039789669.1 mRNA upstream 9872 12442130 ~ 12456583 (+) True LOC120552034
XM_039789679.1 mRNA upstream 9872 12442130 ~ 12456583 (+) False LOC120552034
XM_039792741.1 mRNA upstream 72617 12388572 ~ 12393838 (+) True aqp11
XM_039787166.1 mRNA upstream 192632 12255637 ~ 12273823 (+) True LOC120550477
XM_039787138.1 mRNA upstream 230704 12218910 ~ 12235751 (+) True LOC120550122
XM_039790737.1 mRNA downstream 102384 12569129 ~ 12573338 (+) True LOC120552565
XM_039790759.1 mRNA downstream 120868 12587613 ~ 12614479 (+) True cep295
XM_039790774.1 mRNA downstream 120868 12587613 ~ 12614479 (+) False cep295
XM_039790782.1 mRNA downstream 120868 12587613 ~ 12614479 (+) False cep295
XM_039790789.1 mRNA downstream 120868 12587613 ~ 12614479 (+) False cep295
TU22469 other upstream 10056 12451505 ~ 12456399 (+) False LOC120552034
TU22453 other upstream 57181 12395995 ~ 12409274 (+) True G16467
TU22150 other upstream 565582 11894504 ~ 11900873 (+) True G16267
XR_005638430.1 other upstream 904051 11562256 ~ 11562404 (+) True LOC120554420
XR_005638440.1 other upstream 905916 11560391 ~ 11560539 (+) True LOC120554427
XR_005638517.1 other downstream 156052 12622797 ~ 12622987 (+) True LOC120554572
XR_005638490.1 other downstream 163929 12630674 ~ 12630864 (+) True LOC120554522
TU22608 other downstream 402127 12868872 ~ 12922469 (+) False G16590
TU22611 other downstream 402127 12868872 ~ 12922469 (+) False G16590
TU22607 other downstream 442895 12909640 ~ 12922469 (+) True G16590

Expression Profile