RNA id: TU22503


Basic Information

Item Value
RNA id TU22503
length 671
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G16511
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 12567794 ~ 12568464 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGATGGGTTGGGggccatacctgtcaagtatcccgttttggccgggaaagtcccgtattttacccttctttcccgccgtcctcccgtattagtattttcccgtaaatctcccgtattttaacctgcgttattaaaaaataataccccgggtccgagcggagtaaaaaaaaaaaacatttccaatctgagctctgtcactagcctcgtgataactgccacctgcagtagcctattacaggtactgtaggtggcagttgtcgcgagtttagtgtgtgaggtcagatgatgagtgacggatgatggacgcttcgacagagacggtgcgctgccaaaacttatgaaggctttactgcattccccatagcaatgcaagttcagaaagggtgtttagcatggtacgaaagattgttacagagaataggatgacgttagacaacagaactgtttgcgctctactctcatgtaaaccactctgtaaaccactctggcccagcccacaaatacactccttccaaaacaatcttaaagaatgcaaagtctgcaacaaatttatacaataactcactaaaagagtaaagaaaatttatgtgaaatgaaaagaaaaactgtaaaagaaaagcaatatgaaatgaaaagaatgtgtggaatgaaaataaaatgtaaagacaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22474 lncRNA upstream 101049 12466455 ~ 12466745 (+) True G16484
TU22444 lncRNA upstream 147072 12416010 ~ 12420722 (+) False G16463
TU22446 lncRNA upstream 147072 12416010 ~ 12420722 (+) True G16463
TU22449 lncRNA upstream 151854 12413499 ~ 12415940 (+) True G16464
TU22448 lncRNA upstream 151947 12413499 ~ 12415847 (+) False G16464
TU22570 lncRNA downstream 40049 12608513 ~ 12609663 (+) True G16559
TU22582 lncRNA downstream 68729 12637193 ~ 12640466 (+) True G16566
TU22584 lncRNA downstream 73218 12641682 ~ 12646018 (+) True G16568
TU22586 lncRNA downstream 79510 12647974 ~ 12651118 (+) True G16570
TU22590 lncRNA downstream 84226 12652690 ~ 12658070 (+) True G16573
XM_039789669.1 mRNA upstream 111211 12442130 ~ 12456583 (+) True LOC120552034
XM_039789679.1 mRNA upstream 111211 12442130 ~ 12456583 (+) False LOC120552034
XM_039792741.1 mRNA upstream 173956 12388572 ~ 12393838 (+) True aqp11
XM_039787166.1 mRNA upstream 293971 12255637 ~ 12273823 (+) True LOC120550477
XM_039787138.1 mRNA upstream 332043 12218910 ~ 12235751 (+) True LOC120550122
XM_039790737.1 mRNA downstream 665 12569129 ~ 12573338 (+) True LOC120552565
XM_039790759.1 mRNA downstream 19149 12587613 ~ 12614479 (+) True cep295
XM_039790774.1 mRNA downstream 19149 12587613 ~ 12614479 (+) False cep295
XM_039790782.1 mRNA downstream 19149 12587613 ~ 12614479 (+) False cep295
XM_039790789.1 mRNA downstream 19149 12587613 ~ 12614479 (+) False cep295
TU22469 other upstream 111395 12451505 ~ 12456399 (+) False LOC120552034
TU22453 other upstream 158520 12395995 ~ 12409274 (+) True G16467
TU22150 other upstream 666921 11894504 ~ 11900873 (+) True G16267
XR_005638430.1 other upstream 1005390 11562256 ~ 11562404 (+) True LOC120554420
XR_005638440.1 other upstream 1007255 11560391 ~ 11560539 (+) True LOC120554427
XR_005638517.1 other downstream 54333 12622797 ~ 12622987 (+) True LOC120554572
XR_005638490.1 other downstream 62210 12630674 ~ 12630864 (+) True LOC120554522
TU22608 other downstream 300408 12868872 ~ 12922469 (+) False G16590
TU22611 other downstream 300408 12868872 ~ 12922469 (+) False G16590
TU22607 other downstream 341176 12909640 ~ 12922469 (+) True G16590

Expression Profile