RNA id: TU22610


Basic Information

Item Value
RNA id TU22610
length 2065
lncRNA type inter_gene
GC content 0.37
exon number 9
gene id G16590
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 12868830 ~ 12922469 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gagagagagagagggagagaaagagagagagagagagagagagagagagagagagagagagagagggacagggcTGTAGCCAGCAATaggcacattttattttattacttccACCATTTTTCCAAAAAGTCACAAGGGGAGCTTCTCCACAGCGCGTTACTGTGGGAGCTCTCAAAATCCAGGGAGTGCAAGCAAACCTTCATTCAGCCAATCAAAAGCATCCATGACATGACGGGTGTACATTTCTGCCCGTGTGAGCGATTTCTGGTATATAAAACTGGAATCATTTCTACTACTACGTCTTACCTATCATATAAATGTATAGTTTCTGTATTTAAATAAGCACCTGAAGCCCCACCCCAGGAGGAGAATAGTTTCACAGAAGCAAATATTTGTGGATTATTATGGTGTGTTGCCTGTCATGGTGATTTCTACAGGAGAAGGCCTTTAGGTACACAAGCCTCGACGTCATGGCTaccaacttttttttcccattagTATTTTTCATtgcgaaaaaaaagaaagaaaaaaaaaaagaaaacttctgGAAGCTCAAACCTATCTACTGGTGAAACTGCTCTCCCTGTGTTGCTATCATCGGCTTTTAAATGTCTgcgttttgtcattttttaaatttttttttaaataaatgtcactCTACTTTGCCCTACTGGAAAGCCTGCGGCCGATTATTCTCGACAACTGGGACTGTGTGTTATTCGtcgcattgaaaaaaaataagtatgtACAGCGCTgagccccgccccccccccccacccaaccaactgcatgaaataaacaaaatcgACAACGAAAAGAAATTCAACTAAGACAGGAGGAGGGAAAGGAGCTGAGGTTAGACAGGTCACCTTATCCAGCAACATGGGAATTATGGGTAAATATGTCATTTTATCTGGTTGGTcaacACCCCacaaaaaaaaggcagagagGGTGAAGCTAAGGACCCACCACTGCAGAGCAACCGTCCCCTGTCCCGCAGCTGCCCCCGGACATGCCTGTCCatataaacctttttttttttttttctcctttaaaCGACAAATTGAATACTCTTGATCCGCGTTACGACATAACGGAGGTGGAAAACATTCGGCGGAGGCCAATCCTAACTACAGTTCAATCAACAAGCTCAGAGTCTCCACACCTCCTCCTGATTCTTTAAACCGGCACACGCAGGGGCacctcaccaccaccaccaccaccacctcaaaTTCTTCCAAACGCTCCATTTCCTGGTGTCTGTCTCTACGCACAGAATAACTCTCTATACAGGGCGGTGGAGAAGGACATGTAGTCCAGGGCTCCGGGGATGGCGTTGGGCCCCGTGTAGGGCGCCATGCGGGCGATGCAGTACTCGGCCTGGTCGGGGGGGAGCTCCCTCCTCAGCTCCTCGGCCGTGATGAAGGGcttatcaGCGGCCAGGATCTTGAAGGAGGCGATGACTTGGTCCGCGGTGTCCGTGTCGGTCGTCTCCCTGGACATGAAGTCAATGAAGGCCTGGAAGGTGACGGCGCCGCTGCCGTTGGGGTCCACTATGCCCATGATGCGAGCAAACTCGCTGTCGCCCTTGTCGTTCTCCACATCGTAGCCCAGGCTGATCAAACAGGCCTTGAACTCCTCCGCCTGCAGGGCCCCGCTGTGGTCCTTGTCAAAGTGGTTGAAGGAGGCGCGGTACTCGTAGAGCTGCTCCTGGCTGATGCCCTTAGCGTCGCGCGTCAGGATCTGGTTCTCCACCTCGTTGATGGTCCTGGCGATGGTGGTCAGCAGCTGCTCCCAGCCCACACGGAGGTGcTCCATTGTGTAGGAAGTGTACTGGTTGTCGAAGATGAGTGCCTCCTGGATGAGCTGATGGTATCCCTCCAGCGTGTTTATTTCGGGCATGTAAGACATGATGGTCTTCTGGTAATCCTTCAGGTGGGTCAGCTGGTCCTCCAGAGTGCCGTTCATTTCAATGGATATCCTGCCGATTTCCTGCCGACAAAAAACGCGCGCTTTAATATCCTGTTAATCCTACAAATGTACGTCCACCATCGCACGCAGCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22596 lncRNA upstream 177723 12690710 ~ 12691107 (+) True G16579
TU22590 lncRNA upstream 210760 12652690 ~ 12658070 (+) True G16573
TU22586 lncRNA upstream 217712 12647974 ~ 12651118 (+) True G16570
TU22584 lncRNA upstream 222812 12641682 ~ 12646018 (+) True G16568
TU22582 lncRNA upstream 228364 12637193 ~ 12640466 (+) True G16566
TU22641 lncRNA downstream 105995 13024216 ~ 13030731 (+) True G16616
TU22652 lncRNA downstream 246615 13164836 ~ 13168275 (+) True G16625
TU22653 lncRNA downstream 252273 13170494 ~ 13171528 (+) True G16626
TU22659 lncRNA downstream 257479 13175700 ~ 13176373 (+) True G16628
TU22658 lncRNA downstream 302215 13220436 ~ 13228024 (+) False G16627
XM_039790774.1 mRNA upstream 254351 12587613 ~ 12614479 (+) False cep295
XM_039788564.1 mRNA downstream 122967 13041188 ~ 13087372 (+) True LOC120551276
XM_039823222.1 mRNA downstream 170686 13088907 ~ 13099538 (+) True zmp:0000000529
XM_039823234.1 mRNA downstream 189641 13107862 ~ 13136030 (+) True hif1al
XM_039785781.1 mRNA downstream 369658 13287879 ~ 13305829 (+) True bbc3
XM_039780767.1 mRNA downstream 422279 13340500 ~ 13359989 (+) True zc3h4
XR_005638490.1 other upstream 237966 12630674 ~ 12630864 (+) True LOC120554522
XR_005638517.1 other upstream 245843 12622797 ~ 12622987 (+) True LOC120554572
TU22469 other upstream 412431 12451505 ~ 12456399 (+) False LOC120552034
TU22453 other upstream 459556 12395995 ~ 12409274 (+) True G16467
TU22150 other upstream 967957 11894504 ~ 11900873 (+) True G16267
unassigned_transcript_88 other downstream 79575 12997796 ~ 12997868 (+) True trnak-uuu_2
unassigned_transcript_90 other downstream 85114 13003335 ~ 13003407 (+) True trnak-uuu_4
XR_005641732.1 other downstream 189641 13107862 ~ 13137034 (+) False hif1al
TU22889 other downstream 638058 13556279 ~ 13562415 (+) True G16788
TU23190 other downstream 1517826 14436047 ~ 14441693 (+) True G16981

Expression Profile