RNA id: TU22611


Basic Information

Item Value
RNA id TU22611
length 2484
RNA type TUCP
GC content 0.42
exon number 12
gene id G16590
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 12868830 ~ 12922469 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gagagctagagggagggagagagagagggagagagagagggacagggcTGTAGCCAGCAATaggcacattttattttattacttccACCATTTTTCCAAAAAGTCACAAGGGGAGCTTCTCCACAGCGCGTTACTGTGGGAGCTCTCAAAATCCAGGGAGTGCAAGCAAACCTTCATTCAGCCAATCAAAAGCATCCATGACATGACGGGTGTACATTTCTGCCCGTGTGAGCGATTTCTGGTATATAAAACTGGAATCATTTCTACTACTACGTCTTACCTATCATATAAATGTATAGTTTCTGTATTTAAATAAGCACCTGAAGCCCCACCCCAGGAGGAGAATAGTTTCACAGAAGCAAATATTTGTGGATTATTATGGTGTGTTGCCTGTCATGGTGATTTCTACAGGAGAAGGCCTTTAGGTACACAAGCCTCGACGTCATGGCTaccaacttttttttcccattagTATTTTTCATtgcgaaaaaaaagaaagaaaaaaaaaaagaaaacttctgGAAGCTCAAACCTATCTACTGGTGAAACTGCTCTCCCTGTGTTGCTATCATCGGCTTTTAAATGTCTgcgttttgtcattttttaaatttttttttaaataaatgtcactCTACTTTGCCCTACTGGAAAGCCTGCGGCCGATTATTCTCGACAACTGGGACTGTGTGTTATTCGtcgcattgaaaaaaaataagtatgtACAGCGCTgagccccgccccccccccccacccaaccaactgcatgaaataaacaaaatcgACAACGAAAAGAAATTCAACTAAGACAGGAGGAGGGAAAGGAGCTGAGGTTAGACAGGTCACCTTATCCAGCAACATGGGAATTATGGGTAAATATGTCATTTTATCTGGTTGGTcaacACCCCacaaaaaaaaggcagagagGGTGAAGCTAAGGACCCACCACTGCAGAGCAACCGTCCCCTGTCCCGCAGCTGCCCCCGGACATGCCTGTCCatataaacctttttttttttttttctcctttaaaCGACAAATTGAATACTCTTGATCCGCGTTACGACATAACGGAGGTGGAAAACATTCGGCGGAGGCCAATCCTAACTACAGTTCAATCAACAAGCTCAGAGTCTCCACACCTCCTCCTGATTCTTTAAACCGGCACACGCAGGGGCacctcaccaccaccaccaccaccacctcaaaTTCTTCCAAACGCTCCATTTCCTGGTGTCTGTCTCTACGCACAGAATAACTCTCTATACAGGGCGGTGGAGAAGGACATGTAGTCCAGGGCTCCGGGGATGGCGTTGGGCCCCGTGTAGGGCGCCATGCGGGCGATGCAGTACTCGGCCTGGTCGGGGGGGAGCTCCCTCCTCAGCTCCTCGGCCGTGATGAAGGGcttatcaGCGGCCAGGATCTTGAAGGAGGCGATGACTTGGTCCGCGGTGTCCGTGTCGGTCGTCTCCCTGGACATGAAGTCAATGAAGGCCTGGAAGGTGACGGCGCCGCTGCCGTTGGGGTCCACTATGCCCATGATGCGAGCAAACTCGCTGTCGCCCTTGTCGTTCTCCACATCGTAGCCCAGGCTGATCAAACAGGCCTTGAACTCCTCCGCCTGCAGGGCCCCGCTGTGGTCCTTGTCAAAGTGGTTGAAGGAGGCGCGGTACTCGTAGAGCTGCTCCTGGCTGATGCCCTTAGCGTCGCGCGTCAGGATCTGGTTCTCCACCTCGTTGATGGTCCTGGCGATGGTGGTCAGCAGCTGCTCCCAGCCCACACGGAGGTGcTCCATTGTGTAGGAAGTGTACTGGTTGTCGAAGATGAGTGCCTCCTGGATGAGCTGATGGTATCCCTCCAGCGTGTTTATTTCGGGCATGTAAGACATGATGGTCTTCTGGTAATCCTTCAGGTGGGTCAGCTGGTCCTCCAGAGTGCCGTTCATTTCAATGGATATCCTGCCGATTTCCTCCATTTTGGCCTGGATGTAGGCGCCGACCGTGTTGGCCTGAGTGGCGAACTTGGCTCTCAGAGTGTCGTTGGAGTTCTGCTTGTTAAGCTCATCCTGCAGGGCGTTGTCACGCAGCGGCACCATGTCCATcgccTTTCCATTTGCTGTCGATGCTCGCCGGTGTGATGGTGGTGTAGGGGTTGGCTCCACTCAGCTTGATGCCGTTGCTCTGGGCAATCTTCTGCACCTCAGCCTGGATGGCCTGGATGGCCTCCCGCTCCTTGTTGGCCTCCGCCAGCGTGGACTTGAACTGCTCGTGGGCTGTGATCAGACcCTGGATCTCCTCGATATTGTGGACGATGAACATGTCCTGCAGGTCCTCCATCGCTCCCTCCATCCAGTTGTTGAAGGGCGCCGCTCTCTTGGCGTACTCCAGGTAAAGCTCATCTATCGACTCCAGCtgcttctctgtcctCTCCAGAGACTCTTTGCGGTTCTGGGTGAGAGTTCCCAGGACGTCCCACTGATCGCAGATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22596 lncRNA upstream 177765 12690710 ~ 12691107 (+) True G16579
TU22590 lncRNA upstream 210802 12652690 ~ 12658070 (+) True G16573
TU22586 lncRNA upstream 217754 12647974 ~ 12651118 (+) True G16570
TU22584 lncRNA upstream 222854 12641682 ~ 12646018 (+) True G16568
TU22582 lncRNA upstream 228406 12637193 ~ 12640466 (+) True G16566
TU22641 lncRNA downstream 101747 13024216 ~ 13030731 (+) True G16616
TU22652 lncRNA downstream 242367 13164836 ~ 13168275 (+) True G16625
TU22653 lncRNA downstream 248025 13170494 ~ 13171528 (+) True G16626
TU22659 lncRNA downstream 253231 13175700 ~ 13176373 (+) True G16628
TU22658 lncRNA downstream 297967 13220436 ~ 13228024 (+) False G16627
XM_039790774.1 mRNA upstream 254393 12587613 ~ 12614479 (+) False cep295
XM_039788564.1 mRNA downstream 118719 13041188 ~ 13087372 (+) True LOC120551276
XM_039823222.1 mRNA downstream 166438 13088907 ~ 13099538 (+) True zmp:0000000529
XM_039823234.1 mRNA downstream 185393 13107862 ~ 13136030 (+) True hif1al
XM_039785781.1 mRNA downstream 365410 13287879 ~ 13305829 (+) True bbc3
XM_039780767.1 mRNA downstream 418031 13340500 ~ 13359989 (+) True zc3h4
XR_005638490.1 other upstream 238008 12630674 ~ 12630864 (+) True LOC120554522
XR_005638517.1 other upstream 245885 12622797 ~ 12622987 (+) True LOC120554572
TU22469 other upstream 412473 12451505 ~ 12456399 (+) False LOC120552034
TU22453 other upstream 459598 12395995 ~ 12409274 (+) True G16467
TU22150 other upstream 967999 11894504 ~ 11900873 (+) True G16267
unassigned_transcript_88 other downstream 75327 12997796 ~ 12997868 (+) True trnak-uuu_2
unassigned_transcript_90 other downstream 80866 13003335 ~ 13003407 (+) True trnak-uuu_4
XR_005641732.1 other downstream 185393 13107862 ~ 13137034 (+) False hif1al
TU22889 other downstream 633810 13556279 ~ 13562415 (+) True G16788
TU23190 other downstream 1513578 14436047 ~ 14441693 (+) True G16981

Expression Profile