RNA id: TU22658


Basic Information

Item Value
RNA id TU22658
length 470
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G16627
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 13220436 ~ 13228024 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaaaaaaaaaaaaaaaaaaaaaaaaaaggggggaGATTTGGCTTGTCGCCGACTTCTGTGAAGTTTTCGAGGGTGTCATTTTTCTTAAACGATCGGTGAAAACATATCTACACGTGTGGTCTTTTGGACAAAATCAAATGACGCTCCGTTCATTTTACCAGCCCAGAAAACCTTGAGACTCCACGGTGagaacaaaacattttgaaaaccagCGACTGACGCCGATTTCACTCTTCGTATCTTAATacttaacagagagagacaaagcaTGGCGGCGGCCCAGAGGTGATCAGACCCACTGATCCAAAAGAAACagctgagagagagtgagagagagagaggtccgTCCACGGCGGCGGCACAGTCCGTCTCATGTTTCCATCCGCCTCAGAAGTGAGTCCGTTTGTTCCCAGCAGCTTCAGCCTGttgacacaaacacaggcagtaagtggtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22659 lncRNA upstream 44063 13175700 ~ 13176373 (+) True G16628
TU22653 lncRNA upstream 48908 13170494 ~ 13171528 (+) True G16626
TU22652 lncRNA upstream 52161 13164836 ~ 13168275 (+) True G16625
TU22641 lncRNA upstream 189705 13024216 ~ 13030731 (+) True G16616
TU22610 lncRNA upstream 302215 12868830 ~ 12918221 (+) False G16590
TU22674 lncRNA downstream 8982 13237006 ~ 13238958 (+) True G16641
TU22808 lncRNA downstream 44950 13272974 ~ 13273387 (+) True G16717
TU22822 lncRNA downstream 117559 13345583 ~ 13346403 (+) False zc3h4
TU22820 lncRNA downstream 168580 13396604 ~ 13398133 (+) True G16726
TU22821 lncRNA downstream 168690 13396714 ~ 13398177 (+) False G16726
XM_039823234.1 mRNA upstream 84406 13107862 ~ 13136030 (+) True hif1al
XM_039823222.1 mRNA upstream 120898 13088907 ~ 13099538 (+) True zmp:0000000529
XM_039788564.1 mRNA upstream 133064 13041188 ~ 13087372 (+) True LOC120551276
XM_039790788.1 mRNA upstream 605957 12587613 ~ 12614479 (+) False cep295
XM_039785781.1 mRNA downstream 59855 13287879 ~ 13305829 (+) True bbc3
XM_039780767.1 mRNA downstream 112476 13340500 ~ 13359989 (+) True zc3h4
XM_039787025.1 mRNA downstream 156176 13384200 ~ 13395559 (+) True zgc:154093
XM_039789782.1 mRNA downstream 173621 13401645 ~ 13417034 (+) True ercc2
XM_039790130.1 mRNA downstream 230948 13458972 ~ 13464796 (+) True ckmb
XR_005641732.1 other upstream 83402 13107862 ~ 13137034 (+) False hif1al
unassigned_transcript_90 other upstream 217029 13003335 ~ 13003407 (+) True trnak-uuu_4
unassigned_transcript_88 other upstream 222568 12997796 ~ 12997868 (+) True trnak-uuu_2
TU22611 other upstream 297967 12868872 ~ 12922469 (+) False G16590
TU22889 other downstream 328255 13556279 ~ 13562415 (+) True G16788
TU23190 other downstream 1208023 14436047 ~ 14441693 (+) True G16981
TU23191 other downstream 1208023 14436047 ~ 14441693 (+) False G16981
TU23312 other downstream 1530243 14758267 ~ 14760824 (+) False rasgrp4
TU23488 other downstream 2237679 15465703 ~ 15542486 (+) True G17201

Expression Profile