RNA id: TU22659


Basic Information

Item Value
RNA id TU22659
length 393
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G16628
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 13175700 ~ 13176373 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCACAACTAATGTTATTAGTGACACCTGTGCTTGTCCTGCTATGACTCAAGATGTCTGCCATGAAAACATGCTTTTATGCTGAAATGTGTGGTTGGTGGTACATACGCGGCCATCGTGAGTGAGGAGGATGGAGTCACTCTTGATGTCTCTGTGGATCACACCCTGTGTGTGGAGGACAGACAACGCCttcaggacagacagacacaccgtGGCGATCTGCTCCTCGTTCATCCTGCAGAGGGAAGAAGACACCAGAGAGATTTAGACTTTTCACCACCTCTGTTTTTGCGGTTGTATTAGTACTGCTTTTTTCTGTTTAAAGCTTTGTGTCTATGTTTCATACAAAATGTTGCAAGAATCTGAAAAACTGtcatataaattaataaaaaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22653 lncRNA upstream 4172 13170494 ~ 13171528 (+) True G16626
TU22652 lncRNA upstream 7425 13164836 ~ 13168275 (+) True G16625
TU22641 lncRNA upstream 144969 13024216 ~ 13030731 (+) True G16616
TU22610 lncRNA upstream 257479 12868830 ~ 12918221 (+) False G16590
TU22596 lncRNA upstream 484593 12690710 ~ 12691107 (+) True G16579
TU22658 lncRNA downstream 44063 13220436 ~ 13228024 (+) False G16627
TU22656 lncRNA downstream 48561 13224934 ~ 13228024 (+) True G16627
TU22674 lncRNA downstream 60633 13237006 ~ 13238958 (+) True G16641
TU22808 lncRNA downstream 96601 13272974 ~ 13273387 (+) True G16717
TU22822 lncRNA downstream 169210 13345583 ~ 13346403 (+) False zc3h4
XM_039823234.1 mRNA upstream 39670 13107862 ~ 13136030 (+) True hif1al
XM_039823222.1 mRNA upstream 76162 13088907 ~ 13099538 (+) True zmp:0000000529
XM_039788564.1 mRNA upstream 88328 13041188 ~ 13087372 (+) True LOC120551276
XM_039790788.1 mRNA upstream 561221 12587613 ~ 12614479 (+) False cep295
XM_039785781.1 mRNA downstream 111506 13287879 ~ 13305829 (+) True bbc3
XM_039780767.1 mRNA downstream 164127 13340500 ~ 13359989 (+) True zc3h4
XM_039787025.1 mRNA downstream 207827 13384200 ~ 13395559 (+) True zgc:154093
XM_039789782.1 mRNA downstream 225272 13401645 ~ 13417034 (+) True ercc2
XM_039790130.1 mRNA downstream 282599 13458972 ~ 13464796 (+) True ckmb
XR_005641732.1 other upstream 38666 13107862 ~ 13137034 (+) False hif1al
unassigned_transcript_90 other upstream 172293 13003335 ~ 13003407 (+) True trnak-uuu_4
unassigned_transcript_88 other upstream 177832 12997796 ~ 12997868 (+) True trnak-uuu_2
TU22611 other upstream 253231 12868872 ~ 12922469 (+) False G16590
TU22889 other downstream 379906 13556279 ~ 13562415 (+) True G16788
TU23190 other downstream 1259674 14436047 ~ 14441693 (+) True G16981
TU23191 other downstream 1259674 14436047 ~ 14441693 (+) False G16981
TU23312 other downstream 1581894 14758267 ~ 14760824 (+) False rasgrp4
TU23488 other downstream 2289330 15465703 ~ 15542486 (+) True G17201

Expression Profile