RNA id: TU22720


Basic Information

Item Value
RNA id TU22720
length 1170
lncRNA type sense_over
GC content 0.43
exon number 2
gene id slc8a2b
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 12664199 ~ 12855727 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATACCACAGACTCGGATACATATTTCAGACGcacacacacacacacacacacacacacaaacaggtctGCTGAACTCGTGTGTAATCTATGACCGGTTGAAGAATGATCGGCACCAGTGGGTACAGGATGCATCGGATTATGTGCTGAGCGTTGTCCCAGAAGGTGTGACCCAGGTGTGGCTCAGCGCCCCAAAAAACAGAACTGTCTACAATGTCCGGACAATGTTCCACGTTTCCATGAACTTCTGTACTAAACTGTCTGGTTTCGGCCTTTGCTGTTCTGTAGCTAGATGTGATGCCTCCCCATCCGGCCTCTCCTCCTCAACCCAGCCCTGCccggtgtgtgtctgtgtttgcttCCCTTCTGTGTTCCTCCCCCAGATGCATGATGAATCCCTGTGTACGTGTGTTAGCAGCATGGTCTTACTGTGATGGACACCTTGTAGGCATATTTTACCTGTGGGGTAATTCCCCCCCACACAGTTTGAATCCCAAATACCAGAGGCTCTTTGTGAAATAAAATGAGCCagtagcacacacacaagacacaaccacaactcggtacagacaaaactgaagagatgcacacacacaccacacacacacacacacacacagagacggcATCTAGGGATTCAGTGTCTACTGCTCATTTGTTTAGTTACCTTTTTAGAAGCTGTGAAAAGAGAGCGTTCTCTGTTGCGTCAAGACTACGGCTGCAACGAGCAACATCCCAGgtcatctttttttgtttgttggtgtacgatatttctgtgtctgtgttagtgtcccccttcttcttctcttgttcTCCCATTCGCTCCCTCCCAGGTCTTGCTCTTcaatgtgtctctctgtgaagTTTTTTCCTGTGATGATGAaaatgtctctctctgcctgaaCCTTTGTAGGGAAATTATGACTGAGTTACTACAATATCATGTGATAGACATAGACATTTATTCAATACTGTAATAAATTATTAACTGAAGATgatatttaagtttttttttatgaaatgcagaaaaagattctttgaaaaaaaaaaaaaatgacaacttGTTTTTGAGAACATGGCATGAGGTGTAATGTGTTACCGAAAGAAAATGAAGGTCTTTAATTACGTGAAATTGACCTTATTTGAatatagtttatttattttcaaggCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22712 lncRNA downstream 34284 12629572 ~ 12629915 (-) False LOC120544465
TU22555 lncRNA downstream 87616 12576233 ~ 12576583 (-) True G16554
TU22527 lncRNA downstream 220190 12443629 ~ 12444009 (-) True G16531
TU22524 lncRNA downstream 248286 12413484 ~ 12415913 (-) True G16528
TU22518 lncRNA downstream 269362 12394490 ~ 12394837 (-) True G16525
TU22721 lncRNA upstream 143881 12822429 ~ 12822922 (-) True G16676
TU22725 lncRNA upstream 190333 12868881 ~ 12911173 (-) True G16678
TU22744 lncRNA upstream 337077 13015625 ~ 13137068 (-) False G16688
TU22746 lncRNA upstream 337077 13015625 ~ 13137068 (-) False G16688
TU22739 lncRNA upstream 395071 13073619 ~ 13137068 (-) True G16688
XM_039782949.1 mRNA downstream 2009 12654605 ~ 12662190 (-) True srsf7a
XM_039782960.1 mRNA downstream 2011 12654605 ~ 12662188 (-) False srsf7a
XM_039778254.1 mRNA downstream 13124 12637723 ~ 12651075 (-) False LOC120544471
XM_039778279.1 mRNA downstream 13126 12637166 ~ 12651073 (-) True LOC120544471
XM_039778261.1 mRNA downstream 15665 12637166 ~ 12648534 (-) False LOC120544471
XM_039785128.1 mRNA upstream 198039 12876587 ~ 12907961 (-) False LOC120548705
XM_039785122.1 mRNA upstream 198039 12876587 ~ 12907961 (-) True LOC120548705
XM_039823070.1 mRNA upstream 232950 12911498 ~ 12983519 (-) False actn4
XM_039823043.1 mRNA upstream 232950 12911498 ~ 12983519 (-) True actn4
XM_039823054.1 mRNA upstream 232950 12911498 ~ 12983518 (-) False actn4
XR_005637072.1 other downstream 2009 12654605 ~ 12662190 (-) False srsf7a
XR_005638514.1 other downstream 98154 12565855 ~ 12566045 (-) True LOC120554567
XR_005638465.1 other downstream 99307 12564729 ~ 12564892 (-) True LOC120554484
XR_005638508.1 other downstream 101700 12562309 ~ 12562499 (-) True LOC120554559
XR_005638463.1 other downstream 102753 12561283 ~ 12561446 (-) True LOC120554479
unassigned_transcript_89 other upstream 320419 12998967 ~ 12999039 (-) True trnak-uuu_3
unassigned_transcript_91 other upstream 325669 13004217 ~ 13004289 (-) True trnak-uuu_5
TU22775 other upstream 570055 13248603 ~ 13261824 (-) False ccdc9
TU22833 other upstream 644320 13322868 ~ 13335139 (-) False sae1
TU22995 other upstream 984359 13662907 ~ 13754616 (-) False si:ch211-14c7.2

Expression Profile