Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU22725 |
| length | 883 |
| lncRNA type | sense_over |
| GC content | 0.35 |
| exon number | 2 |
| gene id | G16678 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_053113.1 |
| NCBI id | CM020910.1 |
| chromosome length | 48524041 |
| location | 12868881 ~ 12911173 (-) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| species | eurasian perch (Perca fluviatilis) |
| id | name | namespace |
|---|---|---|
| GO:0043254 | regulation of protein-containing complex assembly | biological_process |
| GO:0044087 | regulation of cellular component biogenesis | biological_process |
| GO:0051128 | regulation of cellular component organization | biological_process |
| GO:0008154 | actin polymerization or depolymerization | biological_process |
| GO:1902903 | regulation of supramolecular fiber organization | biological_process |
| GO:0090066 | regulation of anatomical structure size | biological_process |
| GO:0051493 | regulation of cytoskeleton organization | biological_process |
| GO:0032956 | regulation of actin cytoskeleton organization | biological_process |
| GO:0007015 | actin filament organization | biological_process |
| GO:0032970 | regulation of actin filament-based process | biological_process |
| GO:0051258 | protein polymerization | biological_process |
| GO:0097435 | supramolecular fiber organization | biological_process |
| GO:0030832 | regulation of actin filament length | biological_process |
| GO:0030833 | regulation of actin filament polymerization | biological_process |
| GO:0030029 | actin filament-based process | biological_process |
| GO:0033043 | regulation of organelle organization | biological_process |
| GO:0034622 | cellular protein-containing complex assembly | biological_process |
| GO:0030036 | actin cytoskeleton organization | biological_process |
| GO:0030041 | actin filament polymerization | biological_process |
| GO:0110053 | regulation of actin filament organization | biological_process |
| GO:0008064 | regulation of actin polymerization or depolymerization | biological_process |
| GO:0032535 | regulation of cellular component size | biological_process |
| GO:0032271 | regulation of protein polymerization | biological_process |
| id | description |
|---|---|
| ko04810 | Regulation of actin cytoskeleton |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU22721 | lncRNA | downstream | 45959 | 12822429 ~ 12822922 (-) | True | G16676 |
| TU22720 | lncRNA | downstream | 190333 | 12664199 ~ 12678548 (-) | False | slc8a2b |
| TU22712 | lncRNA | downstream | 238966 | 12629572 ~ 12629915 (-) | False | LOC120544465 |
| TU22555 | lncRNA | downstream | 292298 | 12576233 ~ 12576583 (-) | True | G16554 |
| TU22527 | lncRNA | downstream | 424872 | 12443629 ~ 12444009 (-) | True | G16531 |
| TU22744 | lncRNA | upstream | 104452 | 13015625 ~ 13137068 (-) | False | G16688 |
| TU22746 | lncRNA | upstream | 104452 | 13015625 ~ 13137068 (-) | False | G16688 |
| TU22739 | lncRNA | upstream | 162446 | 13073619 ~ 13137068 (-) | True | G16688 |
| TU22737 | lncRNA | upstream | 188364 | 13099537 ~ 13137068 (-) | False | G16688 |
| TU22738 | lncRNA | upstream | 188364 | 13099537 ~ 13137068 (-) | False | G16688 |
| XM_039779394.1 | mRNA | downstream | 13154 | 12664199 ~ 12855727 (-) | True | slc8a2b |
| XM_039779404.1 | mRNA | downstream | 13168 | 12664199 ~ 12855713 (-) | False | slc8a2b |
| XM_039782949.1 | mRNA | downstream | 206691 | 12654605 ~ 12662190 (-) | True | srsf7a |
| XM_039782960.1 | mRNA | downstream | 206693 | 12654605 ~ 12662188 (-) | False | srsf7a |
| XM_039778254.1 | mRNA | downstream | 217806 | 12637723 ~ 12651075 (-) | False | LOC120544471 |
| XM_039823070.1 | mRNA | upstream | 325 | 12911498 ~ 12983519 (-) | False | actn4 |
| XM_039823043.1 | mRNA | upstream | 325 | 12911498 ~ 12983519 (-) | True | actn4 |
| XM_039823054.1 | mRNA | upstream | 325 | 12911498 ~ 12983518 (-) | False | actn4 |
| XM_039823060.1 | mRNA | upstream | 325 | 12911498 ~ 12983518 (-) | False | actn4 |
| XM_039823035.1 | mRNA | upstream | 325 | 12911498 ~ 12983518 (-) | False | actn4 |
| XR_005637072.1 | other | downstream | 206691 | 12654605 ~ 12662190 (-) | False | srsf7a |
| XR_005638514.1 | other | downstream | 302836 | 12565855 ~ 12566045 (-) | True | LOC120554567 |
| XR_005638465.1 | other | downstream | 303989 | 12564729 ~ 12564892 (-) | True | LOC120554484 |
| XR_005638508.1 | other | downstream | 306382 | 12562309 ~ 12562499 (-) | True | LOC120554559 |
| XR_005638463.1 | other | downstream | 307435 | 12561283 ~ 12561446 (-) | True | LOC120554479 |
| unassigned_transcript_89 | other | upstream | 87794 | 12998967 ~ 12999039 (-) | True | trnak-uuu_3 |
| unassigned_transcript_91 | other | upstream | 93044 | 13004217 ~ 13004289 (-) | True | trnak-uuu_5 |
| TU22775 | other | upstream | 337430 | 13248603 ~ 13261824 (-) | False | ccdc9 |
| TU22833 | other | upstream | 411695 | 13322868 ~ 13335139 (-) | False | sae1 |
| TU22995 | other | upstream | 751734 | 13662907 ~ 13754616 (-) | False | si:ch211-14c7.2 |
