RNA id: TU22777


Basic Information

Item Value
RNA id TU22777
length 3535
lncRNA type sense_over
GC content 0.45
exon number 2
gene id ccdc9
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 13224914 ~ 13261849 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCGAATTGTAATACCTACTTTTAATAGTAACATTTCAGTAAATGTATAtctatgtatttttttgttacattttgcttTACAAAGTTAGGAAAGCAACGTTTAAGTTCAGCCTGAAGTTGCCATACACATAGAGGAATTTGCAGCTCTATTATCGACCAaccaataaatatatttatttggtTATTTGACAATTCTTGTTAGGTCCAGACCTAGTTAACTCTCAGTGCCCTTTTACCCCCACAGACTGTCCAGTTTGTCTCAtctttgttacacacacacacacactgtacgtGTGGCTGAAACATGTTGATATTCTTATTTGATTCTCAATTTCTGATGttcagtaaaagaaaatgtaagaTGAAACATTGTAAGGACAGATTTCTGTTGTCTTCTTGTGTTCTTTGGTGTAAATGCCACTGATTGCATCCACACTTCTTCTGATGACTCGTGATAAACAGCAGAAGACAGATGAGCTCATGAGTGCATGGCTGAAGCTGCTGGGAACAAACGGACTCACTTCTGAGGCGGATGGAAACATGAGACGGACTGTGCCGCCGCCGTGGAcggacctctctctctctcactctctctcagctGTTTCTTTTGGATCAGTGGGTCTGATCACCTCTGGGCCGCCGCCAtgctttgtctctctctgttaagtATTAAGATACGAAGAGTGAAATCGGCGTCAGTCGctggttttcaaaatgttttgttctCACCGTGGAGTCTCAAGGTTTTCTGGGCTGGTAAAATGAACGGAGCGTCATTTGATTTTGTCCAAAAGACCACACGTGTAGATATGTTTTCACCGATCGTTTAAGAAAAATGACACCCTCGAAAACTTCACAGAAGTCGGCGACAAGCCAAATCtcccccctttttcttttttttttctttgttttaggtGATGATAACAATTGTGGTTTGCAGCACTGACATGTTGTAGGCTGATCCATTTTCATGCACAGTCTTTTGCCCATTGATAACACCCCTAAACCAGGCAGATGCTTGCTGAGCCGGGCCGGTCCACGCTGAATGAAGCAGGATATGCGGGCAGgttttgtactgtatgtagaaaACTCACAACACCAAGCCCTACCTGACCTGAGATCATTATATAGAAGCTTTCAGAGGACCAGTTTGGAGGTccacatgtttttcttttaaacataCCGCTCAGCTGTCTCAGGAACAGAACAGATGTGGCTcatttctgtgttttgtcttGAAAATAATCCCTTCATTAACGATTGATTGGATTAATTCAGCCTCTTAACTAGTGCCAGCTTAACGAGTTAACCATAGCATGTGGCGACCTTCTGTCTTGTTGTAAACACGGATAACGTATTTAATAGAAGCCTGTGTTAATAGCTGCTACTACTGTAGGTATATTTTTAAAGAGTACTCCACCGATTTAGCGCTGAACGCCAATAAcgttacccacaatgcaatttGACCACCGACAAGAGGTATCCCAGATTATCAGATTTTGTGCAGCTCCCCCCGGAGCAAAGAAAAGGCtttataaagcttttttttttccacatcccCAACAtctgtaaacagacttttgaTGTGTAATATCGGAGGAATACCTTTTTTTATATTGATTGCGTTGCCAGTTTTTGTCTGTTGGTTACAAGTCCCAGTGTTGGATTAGAGACTAAAACAAGACCACAAAACAATCGCCTCTCGTTGCAGTTGCGCTGATCTTTTTGTTGCAACTTCAAAGCTTCGGCTGTGAGTGATTTCCATCTTGTGACTGTTTCAAATCTCAGTGATCACCATTAGGTTGCATTCACACCAAATCAGGCATTGCTGCGAAAACGCCAGTCCTCTCATTCATTTGAATGTGGGTAGTGCAagggattttgtttttaaaatacgTGCAGGGGCAAAAGTTGAAACGGAATGAATTTTATGGAGAAACGCAGCCCGACGTCTCGCTGCAGTGGCCAATCACGTAACCCGCGATCAAATAAAAACCCAATGGAGTGTTACGTTATTATGTGTAGTCACTCAATTTGGCCTAATGCACCAGTTTAAACCTAACATAATGAAAGACCTCACATCCTGGCTAGCTATCGAAAgtagatgttttcttaatttgtcgATGCGGACAGACAATCACTCGTAGGAACCAGCATACTAGCAGCATAACTAAATTCCACTGTAGCACCTAGGAAACAGTGTTCATGATGCAGAGATGGGACTCCAGCCTACAGCCTGCATTgctctttggttttattttgtggaTTTTACTTATTGGGACATGGAAATAGTTTTTATATCCGACCCACTGACACTCTTATATTTTTACTTCTAAAGACATCTGGACACACTAAAGATCTTTCAAAAATAAGAATCTTCAGCCCTACCGTTTACATGAGCTTCGCAGCAGGTATATCGTGATGTTTtaagtgtaatttattttttatgttttgcatCAGAGCCAGCTGTGCAGGCCTGCTGTTGTTGAATAACCGACTTCAATGAGCAGCCATTCATCTGAGATGTTCTCACCCAGATTAACTGATTAAGATGTGTTGCTTGAGGGCACTTCGCTACAACATCCCCCTCGTCTCAAATCCATCAAAATACCTATTATGTACTTAGAGGCGGCGGTCCAtttgctgtttttaaattatttaattcacAATCATGATTACTAAAAAGATGTGACTTTGATTTTCTCTGACGCAGACTGCGCTGTCATTTTGTGAATCCATACTTCTAGAGAGAAATCTTTTCATATCCGTCTGGGAAGAGTTCCCCTCTCTATAGGGGACACACTgcctttttaattgtttttaaaatcaagGATCTCGCTTTACGTTATGAGTGTTATTGGCTTtacgttaaatatatatatttttgtttaacaGCCATGTTTTGAGGACATAACTGTCTCTTATTTAGAAAGAAAGAGCCGTTTTATTTTGGTATGAAAGCCTTCACTCATACCTCAGCAGATCAAGGgcttttggtttggtttgtttttgagTGTGTGCTTGGTTTCCGCAAAGTCTTTGAATCATGCCTGTGGACGCTGGGATAAATGGgttgctttaatgtttttgtgttcTGTATCAGAGGAATAGAAATTATGCATTTGGATCGAAAGGAACGGCAATATGTACAGTTTGTAAATGGAAATGAACATTCCACCTTTGGGGCAAAATGTAGCCTGTGAGCTATAAAACCGTTTTGCATATGGATATTTGTTTTTCTGAGCTTCGATGACTGATTGTAACTTAGGCAGGAGAAATTTCAACGTGTTAATCTATTTCTACAACGTCTTCCTGTTTGATACATGAAATTGTTTTAAGAACTAACAAGGTTGCGGTTTTCAGAAAGATTATCAGGACTAGCATGAATCCAAaattttagctttttaatgTTATCAAAGCcatcaattaaataaatgtcccCAACATCACATCAGAGAGAGCTGTAATGTTTGTACCCACAGGAAATGTAAAGCACGCAGTTGCTTTTAGCAGTTTTTGTTTCTCTTATTTAGcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22774 lncRNA downstream 59340 13164817 ~ 13165594 (-) True G16709
TU22739 lncRNA downstream 87866 13073619 ~ 13137068 (-) True G16688
TU22805 lncRNA upstream 23920 13254343 ~ 13255880 (-) False G16716
TU22801 lncRNA upstream 24494 13254917 ~ 13255535 (-) False G16716
TU22803 lncRNA upstream 24605 13255028 ~ 13255535 (-) False G16716
TU22807 lncRNA upstream 24605 13255028 ~ 13255880 (-) True G16716
TU22835 lncRNA upstream 87640 13318063 ~ 13360219 (-) True G16737
XM_039788578.1 mRNA downstream 14408 13170383 ~ 13210526 (-) True pak4
XM_039823256.1 mRNA downstream 62976 13145662 ~ 13161958 (-) False zgc:152863
XM_039823248.1 mRNA downstream 62976 13145662 ~ 13161958 (-) True zgc:152863
XM_039823210.1 mRNA downstream 194289 13024216 ~ 13030645 (-) False eif3k
XM_039823202.1 mRNA downstream 194289 13024216 ~ 13030645 (-) True eif3k
XM_039791709.1 mRNA upstream 83020 13313443 ~ 13335153 (-) True sae1
XM_039790089.1 mRNA upstream 188528 13418951 ~ 13446001 (-) True klc3
XM_039790118.1 mRNA upstream 234589 13465012 ~ 13530107 (-) False mark4b
XM_039790099.1 mRNA upstream 234589 13465012 ~ 13530106 (-) True mark4b
XM_039790108.1 mRNA upstream 237600 13468023 ~ 13530107 (-) False mark4b
unassigned_transcript_91 other downstream 220645 13004217 ~ 13004289 (-) True trnak-uuu_5
unassigned_transcript_89 other downstream 225895 12998967 ~ 12999039 (-) True trnak-uuu_3
XR_005637072.1 other downstream 562744 12654605 ~ 12662190 (-) False srsf7a
XR_005638514.1 other downstream 658889 12565855 ~ 12566045 (-) True LOC120554567
XR_005638465.1 other downstream 660042 12564729 ~ 12564892 (-) True LOC120554484
TU22775 other upstream 18180 13248603 ~ 13261824 (-) False ccdc9
TU22833 other upstream 92445 13322868 ~ 13335139 (-) False sae1
TU22995 other upstream 432484 13662907 ~ 13754616 (-) False si:ch211-14c7.2
TU23000 other upstream 471220 13701643 ~ 13708040 (-) True G16871
TU23022 other upstream 585673 13816096 ~ 13823057 (-) False G16880

Expression Profile