RNA id: TU22801


Basic Information

Item Value
RNA id TU22801
length 511
lncRNA type intronic
GC content 0.40
exon number 2
gene id G16716
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 13254343 ~ 13255880 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctgttaatacaacacagctgataggttagtctctgttaatacaacacagctgataggttagactctgttaatacaacacagctgataggttagactctctctgttaatacaacacagctgataggttagtctctctctgttaatacaacacagctgataggttagtctctccctgttaatacaacacagctgataggttagtctctccctgttaatacaacacagctgataggttagactctctctgttaatacaacacagctgataggttagtctctctctgttaatacaacacagctgataggttagtctctgttaatacaacacagctgataggttagactctccctgttaatacaacacagctgataggttagtctctccctgttaatacaacacagctgataggttagactctcctgttaatacaacacagctgataggttagactctctctgttaatacaacacagctgataggttagactctctctgttaatacaacacagctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22777 lncRNA downstream 24494 13224934 ~ 13230423 (-) False ccdc9
TU22774 lncRNA downstream 89323 13164817 ~ 13165594 (-) True G16709
TU22742 lncRNA downstream 117849 13099537 ~ 13137068 (-) False G16688
TU22835 lncRNA upstream 62528 13318063 ~ 13360219 (-) True G16737
TU22851 lncRNA upstream 140675 13396210 ~ 13398320 (-) True G16751
TU22849 lncRNA upstream 141082 13396617 ~ 13398182 (-) False G16751
TU23001 lncRNA upstream 449946 13705481 ~ 13708040 (-) False G16871
TU23024 lncRNA upstream 500414 13755949 ~ 13822497 (-) False G16880
XM_039788578.1 mRNA downstream 44391 13170383 ~ 13210526 (-) True pak4
XM_039823256.1 mRNA downstream 92959 13145662 ~ 13161958 (-) False zgc:152863
XM_039823248.1 mRNA downstream 92959 13145662 ~ 13161958 (-) True zgc:152863
XM_039823210.1 mRNA downstream 224272 13024216 ~ 13030645 (-) False eif3k
XM_039791709.1 mRNA upstream 57908 13313443 ~ 13335153 (-) True sae1
XM_039790089.1 mRNA upstream 163416 13418951 ~ 13446001 (-) True klc3
XM_039790118.1 mRNA upstream 209477 13465012 ~ 13530107 (-) False mark4b
XM_039790099.1 mRNA upstream 209477 13465012 ~ 13530106 (-) True mark4b
XM_039790108.1 mRNA upstream 212488 13468023 ~ 13530107 (-) False mark4b
unassigned_transcript_91 other downstream 250628 13004217 ~ 13004289 (-) True trnak-uuu_5
unassigned_transcript_89 other downstream 255878 12998967 ~ 12999039 (-) True trnak-uuu_3
XR_005637072.1 other downstream 592727 12654605 ~ 12662190 (-) False srsf7a
XR_005638514.1 other downstream 688872 12565855 ~ 12566045 (-) True LOC120554567
XR_005638465.1 other downstream 690025 12564729 ~ 12564892 (-) True LOC120554484
TU22833 other upstream 67333 13322868 ~ 13335139 (-) False sae1
TU22995 other upstream 407372 13662907 ~ 13754616 (-) False si:ch211-14c7.2
TU23000 other upstream 446108 13701643 ~ 13708040 (-) True G16871
TU23022 other upstream 560561 13816096 ~ 13823057 (-) False G16880
TU23133 other upstream 826428 14081963 ~ 14086764 (-) False gpr4

Expression Profile