RNA id: TCONS_00006727


Basic Information

Item Value
RNA id TCONS_00006727
length 2143
RNA type mRNA
GC content 0.43
exon number 5
gene id XLOC_003445
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 24313931 ~ 24332052 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAAATGACAGGACCTCGACGTCATGGAGATGCAGTGGGACGGTGCTAAAAACACACATTATAACATTTCGTGGCCCTGGATGATGCTGAGAGACGCTCGGCGGGGACCCACGAGACTTTACAGTCGAGGGCCCGTTTGTTGAGCTGTGTTTATGGGACCATGTGAGTAATATAAACAGAAGACGCGTTTCTCCGCACAGAGCTCGAGCTGAGTTGGCAACAGGAGCCCACCTGTGTTTAATCACAAAGACACGATACATGCAACTTCACGCCGCAGCCTCTCTGAGGGCAAAGTGGGAGGATGAACTGAGGAGAGACGCGCTCTGGAGCCCTAAAAGTTGTTGTGGCGAGATAAAGgCATACCTATGTTTATAAGATGACACTCAACACACAGAAGGAGGGAAAGGAGCCGCTGAGGAGACGAGCAAGCACCCCCATCCCCTCCTCTCGTCAAGCGGGACGAGGAGACAGAGACCCCTCGACTGACCCCTATCACCCTCCGCTCGCCCAGTCTGCCTCGTACCACCCTGGAGACAAGAGCATCCACTCACGGGCCAACTGGTCCTCAGACTCCGAATCGGACAGCTCAGGATCCGAGTGTCTTTACCGTGTGGTTTTGTTAGGTGATCATGGCGTGGGGAAGTCAAGCCTTGCCAACATTTTTGCTGGAATACAAGAGAAGGATGCCCACAAACACATTGGAGAGGATGCATATGAAAGAACTCTTATGGTTGATGGAGAGGATACAACACTAGTTGTGATGGACCCTTGGGAAACAGATAAACAGGAGGATGATGAGAAGTTCTTACAGGATTACTGTATGCAGGTGGGCAATGCTTACATCATAGTTTACTCCATCACTGACCGCAGCAGCTTTGAAAGTGCATCAGAGTTACGGATCCAGCTGCGGCGTATACGGCAGGCTGAAAACATTCCCATCATCCTCGTGGGCAACAAAAGTGACTTAGTGCGCTCTCGAGAGGTGGCAGTGGAAGAGGGTCGAGCTTGTGCAGTGATGTTCGACTGCAAGTTCATAGAAACCTCAGCCTCCCTCCATCACAACGTCCACGAGCTCTTTGAGGGCACTGTGAGGCAGATCCGACTACGGCGAGACAGCAAAGAGATCAATGAGCGCCGACGCTCCGTCTACAAGCGAAAGGAGAGCATCACAAAGAAGGCCAGACGCTTCCTGGATCGACTGGTGGCcaagaacaacaaaaaaatggcCCTAAAAGTGCGCTCTAAATCCTGCCATGACCTCGCTGTGCTGTGAAGACACAGATCACTCACATTCTTCTCATTTCTGGTCTGATGGCGACAGAGGATTTGCTTTTCAGAGACATTAATTCACTTTTTTTGCTTTTggttcattgtttatttattcattcatgttgaaTCTTATAGTATTTACAACCTTTTTAGTGATTATCTTGTAGACTGAAGGGTTATCGGTCTCTGTTATGTGTCCTATAGATCAAAACCGTTTTTAACAGTATATCACCTTTTAAGTGgactttattttttatgaacattttatcaGTGTTTGCCTTATCAGATGGAATAGGGAATAAATAGAACGAATTAATGAGCAATATTTATTATTCACTGTTGTttagatgttttctttaaaataaagaaagTATTTTGTATACAGTTACAATGAGAAAAGCACTGCCTGCTGGAAAAGTTTAAAGACAGCTGAAGCAGTGTTATTTTTTCCTCCGAGAAGTTTAGTctaataaagcaaaaaatattatagaCATGTCAATCATCGTTTAAAAAGGGCATGTGAATATCCCCCATAAGCCTGTTAAAGTTTATTTGGATGAGATAGTTGGTCAGTAAACGAAGCTGGTCAGTAAACATTATGAAGGTGTCAGATGTTTTAGCAAAAACCTATTATAGCAACAAAAATAATGGTTTACAGGCTTTCTTTGTACGTTAAATGTATTTTGTGTACTTCTTTTGGCACTGGATCCAGAGGCGGAAATGCTTTTTGTACAACTTAATGTTGTtggtttgtaaatatttatttccaaaatttgtaaaataataaatgactttgaaatatgtaaatataattatgTTTTGCATAAATGCAGACACAACTTTCAATGTTTTCTATTAAATCCTGATCTGcaaa

Function

GO:

id name namespace
GO:1901842 negative regulation of high voltage-gated calcium channel activity biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0005246 calcium channel regulator activity molecular_function

KEGG:

id description
ko04031 GTP-binding proteins

ZFIN:

id description
ZDB-GENE-040317-1 Enables calcium channel regulator activity. Predicted to act upstream of or within negative regulation of high voltage-gated calcium channel activity and signal transduction. Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in nervous system; neural tube; segmental plate; and somite. Orthologous to human REM1 (RRAD and GEM like GTPase 1).

Ensembl:

ensembl_id ENSDART00000017599

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008610 lncRNA upstream 62315 24120291 ~ 24251616 (+) False XLOC_003442
TCONS_00008400 lncRNA upstream 136280 24176418 ~ 24177651 (+) True XLOC_003443
TCONS_00006722 lncRNA upstream 162714 24116083 ~ 24151217 (+) True XLOC_003441
TCONS_00008608 lncRNA upstream 230343 24063943 ~ 24083588 (+) False XLOC_003440
TCONS_00006737 lncRNA downstream 8075 24339393 ~ 24340922 (+) False XLOC_003446
TCONS_00008611 lncRNA downstream 8078 24339396 ~ 24344016 (+) False XLOC_003446
TCONS_00006741 lncRNA downstream 8713 24340031 ~ 24343193 (+) False XLOC_003446
TCONS_00006743 lncRNA downstream 11692 24343010 ~ 24344016 (+) False XLOC_003446
TCONS_00006744 lncRNA downstream 12010 24343328 ~ 24344304 (+) False XLOC_003446
TCONS_00006726 mRNA upstream 3286 24298432 ~ 24310645 (+) True XLOC_003442
TCONS_00006724 mRNA upstream 14393 24251141 ~ 24299538 (+) False XLOC_003442
TCONS_00006725 mRNA upstream 16230 24290130 ~ 24297701 (+) False XLOC_003442
TCONS_00006720 mRNA upstream 257322 24046179 ~ 24056609 (+) True XLOC_003439
TCONS_00006717 mRNA upstream 269345 24034345 ~ 24044586 (+) False XLOC_003438
TCONS_00006733 mRNA downstream 8059 24339377 ~ 24343241 (+) False XLOC_003446
TCONS_00006734 mRNA downstream 8061 24339379 ~ 24345421 (+) False XLOC_003446
TCONS_00006736 mRNA downstream 8067 24339385 ~ 24345421 (+) False XLOC_003446
TCONS_00006739 mRNA downstream 8087 24339405 ~ 24342072 (+) False XLOC_003446
TCONS_00006740 mRNA downstream 8187 24339505 ~ 24348715 (+) False XLOC_003446
TCONS_00006723 other upstream 134993 24178823 ~ 24178938 (+) True XLOC_003444
TCONS_00006700 other upstream 916546 23397270 ~ 23397385 (+) True XLOC_003428
TCONS_00006698 other upstream 1599800 22714015 ~ 22714131 (+) True XLOC_003425
TCONS_00006686 other upstream 2663293 21650522 ~ 21650638 (+) True XLOC_003418
TCONS_00006677 other upstream 3261587 21052228 ~ 21052344 (+) True XLOC_003409
TCONS_00006731 other downstream 8044 24339362 ~ 24345423 (+) False XLOC_003446
TCONS_00006732 other downstream 8056 24339374 ~ 24345421 (+) False XLOC_003446
TCONS_00006735 other downstream 8067 24339385 ~ 24342063 (+) False XLOC_003446
TCONS_00006738 other downstream 8078 24339396 ~ 24340731 (+) False XLOC_003446
TCONS_00006746 other downstream 249261 24580579 ~ 24581114 (+) True XLOC_003447

Expression Profile

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