RNA id: XM_039783404.1


Basic Information

Item Value
RNA id XM_039783404.1
length 6827
RNA type mRNA
GC content 0.48
exon number 6
gene id si:ch211-14c7.2
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 13662907 ~ 13762368 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCATCCTGCTATGTGAGCGCACCGGAGGCTACTGCGGTAAGATGCGGCGACGCACGATGCCGAGCGGTGGATGACATGATGCGCAATGGCCGAACGAGtgtggggggggagagagacacgGAAATAAGATTCACTGCGTGGTGTTAAGCTCTAATTTAGACGATGGCACAGAAGTGAATGCATGTTTGACTCGTTTGTAGTGCTGTAGCGCCAGTGGTGCAGGCCGAGTGGAAGGATGTGGCGGCGCTGATCCCACTAAAGGACGCTCCACAGCCCGAGGACGGTTGAATAAAGGCTTCGTCAGTAAACAACGAGGACGCACAAAGACATTAAGTAAAGGACACTTAATTCAAAGCCTGGACCGGGGACACTGAGGCATCGAATGAGCTAAGAAACAAGCAAACCTTTCATCGGGCATCCCTTTCAGGACATAAAGGCTGGGGATAGTGTTTCCAGGTGGTTTTATGACAGCTGAGTCAGTCCTCAGTGAGAAAGACATGAAGCTCTGAAGAAGGCATCGCTGAGCATCAGTCTGGTAGAAAACAAACGTCTCATTATCCTCTCTATCATCGGCGCTGACAGCTGGACGTCTGACCTGGGCGTTTCTTTTCTTCGCCAGGAGACTCTCAAAGATAAGGAGCGATTAAGGGGAAACAGAAGCACAACTCCATCTCGCTGTCAGGAAAACAGTCCATTctatttttgtctttgtgtccAAAAACTCAGATGCCGTTTGAGTGAACTGAGTCAGCTCCCTCTTGCGGTGTCAAGTAAATATATTCTCCCTTGTCAGAATGAATCAGTAAGACATTCTCAAGAGTATTTCAGCTACTGCATAATGCTTAGGGTATTTTTTCCAAAGTCTGATCTTTTTTCATTTGAGCTTTCACGCTCTGAATCAAGAATAGACTCTTGATAGGGCCAGCATTCTCTCTTACAAATGAGAATTCAACTTGACCTGACAGGCTGCGTTTTAATAAAGTATAAGCGAGGACGAACCAATAAAACATAAATGAGGCCAACAACAAGCACCATGCTCCAGcagaataacaacaacaactacccCTGCCTGAATGTGTCAGGCTCCACCCGGGAAATGCTCCAGAAGTGCTCCAGAGCCTCTCTGCCCTTCCCCAGCCGGCTGGAGCTGGGCCTGGGAGACCTGCCGCTCATCCGAGGCCTCCGAGCCTGGGCCCTGTGCTCCAAGAGCCGCCGAAAGGCTGGTGGTGTGCTGGGAGGAGGACAAGCCCCCACAGCTCTTCCTGCGGTCCGCGGGGGTTCGACTTCCTGCCCCAGGCCTGCAGATGTATACCTGAGCGGGGAGTGGGGTCGCATGGGGTACGGGCTTCCCTTGGGACTGGATGCCAGGCAGGCTGGGATCGGAGCTTTGGTAACAGTTGCCACTCTGAAGACCTCAGAGGGCGGTGGGAAGACCCAAACTCAATGCCTCTTCCTCCGGACTGAGAAAGGGAGCTGTTTGTACTCCACAGCTAAGCCCAGTTCTGGTGTGACTAACAGTGCCGCCTCCAGCGTGGTTGGGGGATGGCTGAGAGGGAAgacaggaggagaaggaggaggaggcagagacaTCCCAACCGGGAGAAGGGACAATGGGCCAACTCCGCCGGCACATACCGGAGTAAACCGCGTTAGGGTGCGATCCGGCCGGCGATGGAGGAAGTCCAGTAATGCAGCAGCTCGGGAGAAAACaggcgtgagcagagagaggcaTCAGAGTAGCAGGGAGGATCCCGCCGGAGAAATCCCTCTGGAAGAAAGGCAGGAAGAGCGAGACAAAGGAGGCCTGGCCAGTGAACAGTTTCCCAGCCCGCAGCAGGACAGCAGGAGAGCCAGACAGGGGAAAGAGGGAGCATGCAGAAGTCCTAGATGCTGCCACAATGCTTCTCTCAAAACCTGTACTCAGTGTGGAAGGAAAGCACAGAGGAGGGAAAGCCAGGATCCACACGAGGGAGGTGAAAGTCCAAGAAGAGGCACCTCAAACAGGCTGAACAGTGAGGTGAAAGGAATGAAGAAGGAGAGGCAAAAGAatgtggaggaggagaaagaaggcCTCTGCACATTAGAGTCATCTTGCTCTGTTTTGGCTGTACCAAACCCTGACCTAGAATTGAACCACTTTCACCCAGAATCTCACAGCGGCTGTGATGTCGAAGAGATCAGAGAAGCCGAGAGCAACGAGGAGCTAAAGACACAAACCTCTCACGGCACGGACGACtattcagagagagaggaggatacAGACTCTGAGGTTATGAAAATACATACCGGACTTAATGATTTCATTCATGGCCACTCTGGACCGGTGACAGATGACTTTACATCAAGACGTATCAGATATTGTGACAGAAAACAAAGTGTAAAAGAAGTAATAGCAGCTAATGTGAATGGATTTTCGGATCACGTGGAGGCAGATCAAGAATCCgaaaaagagatggagagggcGGATGttgaagaggaggaagggagcTTCAATCAGACGCCTGCAGGATTCTCGGTTGTATCTGACTGCTATGAGGACGTCGCTGTCTCCACCTGCCCTGCACCCATCAGCACTGCAGTCTCTCCCGAGCACCCCGCCGCTGTAGAGGGCAGCAACTGCAATGCTGACCGTGACACTTGTGGTGGTCGGAGAGAGCAGGAGAACAGCAGGGAAGATTCCCTCGAGGGGTATCAACAAGGGGTAGCAGACCCAGGGATTGTTACGGGTAAAGAAGAACTGGATGTAAGCAGATTTGAGCAACAAGACCTGAACTGTGCGGCTGGCGAGGACAACACTTGGAACGAGAACAAAAACGGAAAACCTCTGTTGTTCTTTCAAACTGTGGGAAACGGCAAAGAGCtgaaggagagagaagctcCATCGTCGCCTCTCAGACAAGTAGCTCCTTCCATTTTTgagacagacagcagaaacGTTACAGAAAACAGTCGCCACCGTTGTACAACTGAGCTTAATGGAGCCGAGCGGAGAGATGAGCTGGTGTGGGATGTTAGAGAAGAGGAGTCACAGGAGGAGAATACAGGGGCCAGAGTAAATCCCAGGGAAGGGGATGAAGAGATTAGATTAGAGATTTGGAGCACCTGCAACGAACCGGAAGACGGCGAGGGTAAAGGCGATGACGATAAAGAACGACACCCTGAGGATGACTTGAATGACAGTACCGTACAGGAGGATAATGACAAAGAAGTAACGAAAAACTGTGCACTAAAAGACAACTGGAGGTCAGAGGAGTCGGCAGAGGGATGCTGTGGAAGGAAGAAAGAGGTTGGAGCCACCTGTGGACAAACCAGCATCAGCCATGTTGAAGCGAATGGAGAGACCAGCACCAACGTCACAAATGTTGCCTGTGCTGATCCCGCCAACGCTCTTGCACACTCCCTGGCTAATCCTCCCCCCTTGTTGCCTCCCCTGGGATCCATGGCAACATGCCTGCCCTGtctggagaaggaggaggaggaggaggcggaggaggatAAGGAAAGGGTCGGCATTCCAGCAGGAGACCTAAAAGAAGGCCAGGAAGGGAAGAGGAGGCTCGGGAGACAGGTGGAAGAGCACGGCGAGGTGGAAGAGCACGGCGAGGTGGAGAGGGGCTCCACCGTGGCCACTGAGGaggggaggaaagaggaggaggaggaggataagGAGGAAGATGAGTTTGGAGTATTCATGCAGGCGGAGGGAGAGCCAGCCTGCAGCGAGGGATACACCATGTCTGCCTCAGTGCCTTGTGGGAGCAGAGCAAGTGTTGCACTTGGAAACCACGCCATCACCGGGGAGTCGACCCACTGGACAACAGGCTGGACAGACAGCTCCTTCCACCAATCAGACGACACCTGGACAGCTTTTCCTCAGGATTCGTCAGATGAAGGCCGAGACATGGTGGGACAGTGGTGGCCAACCAGCGCAGTGGAGGAGAGCAGAAACAGCCTCTCGGCCAATCAGAATCTGGCGGCTGTCTTTGCTGAAGCCTTCCCCTCGCTGCCTGCTTCATCTTCAAGTGACCCCTGTGACCACGATACTGTTCCCACACTGACCCAGCTCCTGAGGGGCAGAGCCAGCCAGGACCAGGGGCTGTTGGACAGTTTCCATGACTTGAACAAAATGATATGCCAGAGATACAAGAGAGAGAATGGCGTGTCTCGTGACCTGCTGCTGAGGACTTTGCGCCTGGCGCAGCCGCACACTGAAAGCAGACCTGCTCCCTGGACATCCAATCGCCGTCTCTCCCCCGGCCTCCCCTCGGCCAATCAGCACGCTCAGAATGCTGCCGCTAAGCGACGGCTGTCATATGACTACAACAGAAACACCATGGAGTAACTGAGCGGGTTCAGCTCTGGTTGGACTGTGATTGATCAACGTTTTCCTGAAGAACTGCAGGTTTTAACCCCAGCAGGGCACAACGGACCAACAGCAGGTTTCTCAAGACTCTGGATTAACAACATGTGTACTACCTGCCAGTCAAATACTGATGGATACACTCCCTGGTTAATTAAGCCTGAGCCGCAGAGAAGCCGTAACCTGGATGAAAATGGAACGACGGTTGTGCTTCAGATCTAGTCTCCTCCAGCTCCTGTAGATGGTGGAGTGTTTCCATTACACATGTGCCACTtgttcaccaccaccaccaccaccaccaccctcctcctcccgttttatattttaattttcctATTCGACCCTGCTAACAGCAGGAAGAGTCAAGAACATTATATCACCACGCCAACCCTGAAATATTTCCTTCCTGTTCTTTTATTATCTAAGATTTTAATTCTACCTAAATAGAAATATTTCTCTTTGTCAGAGCTGCTGTTTTCGGCGGAAACTGTCTCATTGTTTGAATGAAATCTCAATGGGTTGAGTCGCACAAAAGGGAATGAATGATTTTGGAAGGTCAGCATGCTTTGCTAACTAGTTCATCCGTATTGATATAAGCAAATATTTCTTCCTCACTCTTCTCCTTCTCTTATCTTTTGCTTTTTGATTAAAGATGAGATAGTTTTCTTTTCCAGAATAGTGTCACTGTGGCTCCACCAAAGAGTCGTCCAACTCAACCAATGAGATTGTTTCTTTTTGTAGAGCAGCTCTGCCAGAAAGGCTGTAGAACTGGTGTTGTGTTCGTGTCATGTGGAAGTGGAAGAAAGCAATAAGAGCAAATTATTTCTATTACAACTTGCAACCATTTAAATTATCATACAGTTCAAGATGGCAGTTGGCAATGTTACGGATAGTGAAATTTGCACACGGAAATTATTCTGAAGGTATTTAGCACTAACCTGTTTGGGtattaagaaaaaataaataaattacattgtttttataacatacaCGTTCCATTTACAAATTAATGTGACATAAAGCTTCTGTCTGCCTCCCATAAATGATGGGAATGAGACAAAAagcatttagtttatttatggagcacatttcaagccaattcaacgttctttacataaaacattaaaagcattGAGGCAAAGTGCAAAAGAAATGCACTACAATTAAAACAGTCATTAAAGAGCCAAGAGAATAGGAAATGAAAACAAGCTCAAATACAGTAAgctataaaatacaagaataacagTTAGAGTGCAGACTAGGAAAttaattatttgatttaataaaaggcagaagcaaacagaaaagtcttctgagagttgcagcggacctgtagttttctgggagtttgttccacatATATGGTGCTTTAAAAACGGAACGCTGCTTCCCCATGTCttgttctgactctggggacagaaagcagacccATCACAGACAACCTGAGAGATCTGACaggcaaacaacaacaactttttttttttttttactcgtaACCTACCACCTGCCACTACTACGGGTGCTAATTTATGAAGCGCTACTATGGGTCGCATTAGAGGGTATTTTCGTATAGTTTGGAGAAGTGGTTAAAACCTGTAATGTATATCTATGGATGCCAACATATCTCTCCAGATGTAAACATCAGCTAGATTCATGCAAACGTCAAAGCTCATGTCCCTCCCTTTGTGTTTCTGAATGAGTGAAGTAACAGAAAATCATGTTATCCCACTGGGGAGCAAAGTAAAGCATTATTTTTACTGGCAGAATGCTGACGATGCGTCCAGATGGGATGAGTCTTACATTTTTGATGCATGTGCtttcattgtgtgtttgtgctacAGAAAAGCCAATGACGAGAAAGAATCTTGAAATAATTTTGGTTCCTCAGAGAAACAAGTTTGTCTTCCAGTTAGTGCCAACAGGAACACCAATGAAAGTGCCAATGTTTACGAGGTAACGGAAGCGAAGCGGATTCAGGAGGAAACGCTGCCTCTGGTTTCTCAGAGACACTGAAGTAGACTCAAACTAAAATGTTGGCATGTGatgtttctctgttttctttgtctttccgTCTGGCTTCCTGTTtgcctttctctctttcagcacaCTCACAGCTGAGTCCATGGGCGTAacttctgaatctagctgccAAATCAaaacactgtttttgttttctgataATATTGTTTACATTATGACCACGTCAATGATGCactgtacattttttatttcgACATTCTATTACATTTTCTCACCTCAGAAGGTTTATTTTGCTTGTATATTTCAATTGTCAACTCAAATCATTTGTGATGAAATTCAGAAACAatcgagtgtgtgtgtctgtcatttGTACAAACTACAAAttgctgaaaaagaaaagatgaataTTTTCTGATCCGTCTCAAATGAGGAAGCAGTTGCCGCCTTGTTAACTGACGTAATAAAATGATACTGTGTGATGGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23001 lncRNA downstream 33479 13705481 ~ 13708040 (-) False G16871
TU22851 lncRNA downstream 343199 13396210 ~ 13398320 (-) True G16751
TU22849 lncRNA downstream 343337 13396617 ~ 13398182 (-) False G16751
TU22835 lncRNA downstream 381300 13318063 ~ 13360219 (-) True G16737
TU22807 lncRNA downstream 485639 13255028 ~ 13255880 (-) True G16716
TU23061 lncRNA upstream 5531 13767899 ~ 13770080 (-) True G16882
TU23023 lncRNA upstream 51318 13813686 ~ 13822497 (-) False G16880
TU23025 lncRNA upstream 51318 13813686 ~ 13823057 (-) True G16880
TU23010 lncRNA upstream 53728 13816096 ~ 13822497 (-) False G16880
TU23011 lncRNA upstream 53728 13816096 ~ 13822497 (-) False G16880
XM_039782114.1 mRNA downstream 4126 13719887 ~ 13737393 (-) True kcnk6
XM_039824503.1 mRNA downstream 47483 13582022 ~ 13694036 (-) False LOC120574254
XM_039824511.1 mRNA downstream 72632 13576093 ~ 13668887 (-) True LOC120574254
XM_039823190.1 mRNA upstream 3176 13765544 ~ 13811769 (-) True prx
XM_039780014.1 mRNA upstream 63548 13825916 ~ 13838806 (-) False pld3
XM_039780023.1 mRNA upstream 63548 13825916 ~ 13838806 (-) True pld3
XM_039791720.1 mRNA upstream 132666 13895034 ~ 13899904 (-) True foxa3
XM_039783199.1 mRNA upstream 145761 13908129 ~ 13912626 (-) True irf2bp1
TU23000 other downstream 33479 13701643 ~ 13708040 (-) True G16871
TU22833 other downstream 406380 13322868 ~ 13335139 (-) False sae1
TU22775 other downstream 479695 13248603 ~ 13261824 (-) False ccdc9
unassigned_transcript_91 other downstream 737230 13004217 ~ 13004289 (-) True trnak-uuu_5
unassigned_transcript_89 other downstream 742480 12998967 ~ 12999039 (-) True trnak-uuu_3
TU23022 other upstream 53728 13816096 ~ 13823057 (-) False G16880
TU23133 other upstream 319595 14081963 ~ 14086764 (-) False gpr4
XR_005641363.1 other upstream 1556472 15318840 ~ 15325798 (-) True si:ch1073-145m9.1
TU23599 other upstream 1933186 15695554 ~ 15706455 (-) False G17287
TU23600 other upstream 1933186 15695554 ~ 15714263 (-) False G17287

Expression Profile