RNA id: TU23022


Basic Information

Item Value
RNA id TU23022
length 1371
RNA type TUCP
GC content 0.43
exon number 4
gene id G16880
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 13755949 ~ 13823057 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCAGCGCGGAGGAGGAGCGTTAACTATTACTGCGCCGGGACCGGTCAGCAGGGGCGGCCATGGCGGCACACAGCCCTGCATATCACTGCTGGACTGGAGAACTTGTTTATTCAGCTTCTATACTGAAGAcggttttgatttaaaaaaaaaatcatgtttgaTCCCGCCTGAAATCATGGACGAGCAACCTTTGTCTGTATGTCCTGCGCGGAGATGCTGCGGGCGTTTTGGTGCTCAAAAAGCTTCGACTTTCTGGGGGTGAGGCTGCAAAGTTTCCGGGCAGAGTTTCAAACCCCGACGGCTGTTTCAAAGAAATGAAGTTTCAGGCTGATGCCCCGCTGATGTCCTCCGTGTCCCGCTGCTCTGCTCACACTCCAGCCGGCTGTTTAAGATGTTTCATCTCCACGATGCTGAAGGAAGGACCAAAGGAGCTACAGCAGTGGACAGATGTGGTGACGAGGGTGCAAACAGTAAACGGTGGAGTCCCATCCCACACGGCAGGCTCTGATCGTACCTTGCCGGAAATCTGCGGGGGAAATGGGCTCCACTACACAGTCTCAACTGGTTGGATGTTACGTTACGATGGATGGACAATGGATATGTCACTTTGCTGCAACTCCCTAGTAAGGCAAACTGTATAGAGTTATACGTTTTAGAATTTGTAACTATAGTAATAAGAACACCATGTGCTTTGCCAGGTTGTGAAAAAGCCCTTCTGCTGGGGTTTTAATTGATGGCTCACTATGAATGAAATATTTTAAAAGCTTGCTAGCATAACTAATTAGAAAGTGAGCTCTCCTTTGTCCTTTGTTACGGACCGCATGCTTCTCACTTTATAAGTTATAAAGGGTACAAATAGTTGTAAATCATTAATAACTAATAATGGGAGGGGGGGAGTTTTAAACAAGCCCAAAGAAATGTAAATCAACACTAATGCTACTAATAAAACATAGAGCCAGTGTGAtactgtgtgtttaatgttgaTTTTAACTGACagactctccctccctctctcccaaaGGCATGACGAGCGTCTGACAAACACCACAGCAGCCAGAGATGCCCTGCAGCATTGCAACTGTACATTAAACTGGTTTTACTGTGTACTACGGTGTTTAGTGGAAGAGTTGTTTATCCGTTATAAAGCTAAAAGTGGGTCCTTTAAGTTAATACAGTGGATTTCCATTATTATCATTTGTCACTGATATGGATAATTTACCGATATTGTATGTTTTTCTAGCAAAATAATCCAATGGGGCCAAATACTTATACAAAGTCTTAACTGTCGTGATGTTGTTTTACTCCTGAGCTGGTCAGGTTTTACAGCAGGACTGGAAACTgataaaggaaataaaacatTCTGTGTCTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23061 lncRNA downstream 46016 13767899 ~ 13770080 (-) True G16882
TU23001 lncRNA downstream 108056 13705481 ~ 13708040 (-) False G16871
TU22851 lncRNA downstream 417776 13396210 ~ 13398320 (-) True G16751
TU22849 lncRNA downstream 417914 13396617 ~ 13398182 (-) False G16751
TU22835 lncRNA downstream 455877 13318063 ~ 13360219 (-) True G16737
TU23068 lncRNA upstream 82147 13905204 ~ 13905788 (-) True G16888
TU23067 lncRNA upstream 82200 13905257 ~ 13905788 (-) False G16888
TU23069 lncRNA upstream 82847 13905904 ~ 13908030 (-) True G16889
TU23088 lncRNA upstream 105286 13928343 ~ 13928714 (-) True G16898
TU23080 lncRNA upstream 128004 13951061 ~ 14016471 (-) False G16894
XM_039823190.1 mRNA downstream 4327 13765544 ~ 13811769 (-) True prx
XM_039783404.1 mRNA downstream 53728 13741519 ~ 13762368 (-) True si:ch211-14c7.2
XM_039782114.1 mRNA downstream 78703 13719887 ~ 13737393 (-) True kcnk6
XM_039824503.1 mRNA downstream 122060 13582022 ~ 13694036 (-) False LOC120574254
XM_039824511.1 mRNA downstream 147209 13576093 ~ 13668887 (-) True LOC120574254
XM_039780014.1 mRNA upstream 2859 13825916 ~ 13838806 (-) False pld3
XM_039780023.1 mRNA upstream 2859 13825916 ~ 13838806 (-) True pld3
XM_039791720.1 mRNA upstream 71977 13895034 ~ 13899904 (-) True foxa3
XM_039783199.1 mRNA upstream 85072 13908129 ~ 13912626 (-) True irf2bp1
XM_039822643.1 mRNA upstream 136713 13959770 ~ 14044832 (-) False nova2
TU22995 other downstream 61480 13662907 ~ 13754616 (-) False si:ch211-14c7.2
TU23000 other downstream 108056 13701643 ~ 13708040 (-) True G16871
TU22833 other downstream 480957 13322868 ~ 13335139 (-) False sae1
TU22775 other downstream 554272 13248603 ~ 13261824 (-) False ccdc9
unassigned_transcript_91 other downstream 811807 13004217 ~ 13004289 (-) True trnak-uuu_5
TU23133 other upstream 258906 14081963 ~ 14086764 (-) False gpr4
XR_005641363.1 other upstream 1495783 15318840 ~ 15325798 (-) True si:ch1073-145m9.1
TU23599 other upstream 1872497 15695554 ~ 15706455 (-) False G17287
TU23600 other upstream 1872497 15695554 ~ 15714263 (-) False G17287
TU23589 other upstream 1879552 15702609 ~ 15714263 (-) True G17287

Expression Profile