RNA id: TU23023


Basic Information

Item Value
RNA id TU23023
length 4029
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G16880
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 13755949 ~ 13823057 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAGACCTAACGGTGCCTGCCTGCGGCGCACATGTTGCGTCAAGTTAGTCGAGTTCCACAGTTTACATGTCGGTCAGTCCGATAGTCCTGCTGCTGTTTTAGGACGAGGGGAACATTCACAATACTGCGTTACTGTGAGTATATCAGTGGTTATTGTTGAATCGTTGGTCGTCTCTCAAACTGCTGTCTCTCCAGTTTCAGGCTGATGCCCCGCTGATGTCCTCCGTGTCCCGCTGCTCTGCTCACACTCCAGCCGGCTGTTTAAGATGTTTCATCTCCACGATGCTGAAGGAAGGACCAAAGGAGCTACAGCAGGTACTGTATACACTGAACATTCTGATGTGATGTGTAATAAATTAAAACTGTGAAGACATGAAGGTGATTTGCACAGTGATTAAAGACGAGAGAAAAACCTGATTAACATGTTTCAAAGTAAGTGGATGTGCAATCAGTGAACAAGCAAGAAAACAAGCCGCTTATTAAAacagaaatagaaatagaacTGAGATCCAGTACGAATTTGGCACAAATACCGCCGAAATATGAGACCAAATATGGCgaaatttaattgaaaaattGACAACAGGTCAGTTTGATGAAGAGCAGGATGATGTATGGATGtaactgtgtgtgagtgtgtagaaGAGAAGAAAACATTTGCACTTTAATTACCATAGTGTCCTGTCAGTGGACAGATGTGGTGACGAGGGTGCAAACAGTAAACGGTGGAGTCCCATCCCACACGGCAGGCTCTGATCGTACCTTGCCGGAAATCTGCGGGGGAAATGGGCTCCACTACACAGTCTCAACTGGTTGGATGTTACGTTACGATGGATGGACAATGGATATGTCACTTTGCTGCAACTCCCTAGTAAGGCAAACTGTATAGAGTTATACGTTTTAGAATTTGTAACTATAGTAATAAGAACACCATGTGCTTTGCCAGGTTGTGAAAAAGCCCTTCTGCTGGGGTTTTAATTGATGGCTCACTATGAATGAAATATTTTAAAAGCTTGCTAGCATAACTAATTAGAAAGTGAGCTCTCCTTTGTCCTTTGTTACGGACCGCATGCTTCTCACTTTATAAGTTATAAAGGGTACAAATAGTTGTAAATCATTAATAACTAATAATGGGAGGGGGGGAGTTTTAAACAAGCCCAAAGAAATGTAAATCAACACTAATGCTACTAATAAAACATAGAGCCAGTGTGAtactgtgtgtttaatgttgaTTTTAACTGACagactctccctccctctctcccaaaGGCATGACGAGCGTCTGACAAACACCACAGCAGCCAGAGATGCCCTGCAGCATTGCAACTGTACATTAAACTGGTTTTACTGTGTACTACGGTGTTTAGTGGAAGAGTTGTTTATCCGTTATAAAGCTAAAAGTGGGTCCTTTAAGTTAATACAGTGGATTTCCATTATTATCATTTGTCACTGATATGGATAATTTACCGATATTGTATGTTTTTCTAGCAAAATAATCCAATGGGGCCAAATACTTATACAAAGTCTTAACTGTCGTGATGTTGTTTTACTCCTGAGCTGGTCAGGTTTTACAGCAGGACTGGAAACTgataaaggaaataaaacatTCTGTGTCTGAGCTCTCATCCCGTCGTGCTTCTGAAGATTATCAACCAATTTAGATCGTCTCTCaattctctcctgtgtgtgatTAATTGGATTTCCCTGACAAATTATTCATCTGTCTGAACGGTGGGAAAGTAGAGGAGTGCTGTCGACCACATTTTTAGGCTTGAAGGTCTAAGTGACTCCGAAGGATCAGCATCGGGAGAAGAAACCCTGTGTGATCCTTCTGAGTCACTTTCTGTTAAACCCACAGGACTCTCAGGgctttagctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgcgcgcgcgcgcgtgcggcgtgcgtgcgtctgtgtgtgtcctcgaTGACTCAGCTATCAACTACTCTGCACTTTGTAGGGATTAGTTGAGGCATGTGGCGGGCCAACACAGCTTCTAATGAGTACAGAAACCACATTTATCACCCTGAGATCTGAGGAAGCATCACACGTTCTCTCCGTGGGTCAGAAACCACAACTGTGTTGAATTAGAGGTcaaccattaaaaaaaagaaaaggtaacACTCACTGTAGTGGCGAATTGTCCTTTAGACTAAACACAAACTAAATCAAACAGCCACTAAGGCACCTAAGGAATGAATCTTGGGCAGAAAAATAAAGACGTTCATTGCCTAGGCAAAGATGTTGAGATGTTGAGTTTTGTGAGGTTTATTTTCTCCAGTTTGGGCAAGCAAACAAAAGAacattgttgtctctattgCCCTGGTAAAAAACCATAAGCCCTCCCCGGTGTCTACCTGGTGCTATCCCTGCTCACCCATATACTTTGTATTTAACTTCACCTAGTGGCTCAGGGTGCGTAGTTCCTTCAATACAAAAGCACCAACAGGCACTTAAAGTAACATAAAGATAGTAATGTTATAATCAAACTTATTCAGCTGTATAATTCtaacaaaataattaaatattgaactattacatttaacaaaacaatgaataaCTCCAACAAGAGCATTAAATAAATTCAGATTTTGGTGCTTTTGAAGCCATTTGAATAATGCACTGTACAAAAAAATGCACACTGTTACAAACGTTTGAATGTATTGAATGATTTTGTTTGATGACCAGTAAGCAGCACTTAATTGTTCATTATTGACGGTCTTGTCTGGCCATAGGGTTTCTAAGGCATATGCCATGTAATCGCAACGTTCCCGCTTCAGTTATTGCTAACAACCTTCAGTCTTTCTCTTCCCatgtttcctgtctgtcattataTTACTATCGGCCTGACTATTACCACTACTGCCACTAATGGCATACACATTAATATCCATCCATGGAAAACTATAGTGTGGTTAAGGTTGGTCTACAGAAACGTTAGGAAAGGGCTTTGGTCATAATTTGAAAAACATTCATTGGTTGACTGAACACAAGCTTTAGTTTTCTGGCATAAAAGTTGGATGCACTTCACGCCCATCACAACCTCCACACCCTTTGCCCTCAACATAGGCATTGGACTTATAACATGTTCTGCACAATTGTCCATATATGAATGTAATACCAATGGATGCAGGGCTGAACATGCAGCACAAGGGTCAGTAGCTTGATAAATACACGTCACCTGCAAAATATACAAGCTTGTATTGCCTGGTCTTTGCATGAAATGTAACTgtgcaacacattttttttaagattattttttgggggcttttccacctttatttgataggacagctaggtgagaaaggggagagagagagggggaagacatgcaggaaatcgtcacaggtcggattcaaaccctggacctctgtgtcgaggcataaactTCCCAAgcacatgtgcgcctgctctacccactgaaccaacctggCCATTGTGCAAAACATATTTAACATAGAAATGAATCTGATCATACAGGGAACAAAGGCCTCCCTGGTTCTTGAACTCTTGAGCTCATGATGCCGCATCAACATGTCAGCCCCTCTGAGCCAGGCTGTGTGACCGAGCTTCAGctggagagatgaagagagctCAGGCTGAGAACTCTCCTTCCTCCGAttagacagaggaagaggaaaggacTGTGACATAAGCAGGAGACAGGACCGAGGATGGAGACAGAGTTAATGACTTGGCCTAGAAACACTGTTGGACTTACAGGCTCCAAAGATGGGCAGCCATCACAGACAAGGCTTCCTGAATCTGGCAAGAATTACATCCCCAACATCAGTTTCAGTCCAATTATCACATCGACTGTAACTATGGTCTGTGTAGAAGTAGGGTTGCACAatttatcgtttttttttatcatcatcgcgatatcaactggcacAATAAACACAACGCAAAAGGCTGctacatatcgcgaaagacatTAAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23061 lncRNA downstream 43606 13767899 ~ 13770080 (-) True G16882
TU23001 lncRNA downstream 105646 13705481 ~ 13708040 (-) False G16871
TU22851 lncRNA downstream 415366 13396210 ~ 13398320 (-) True G16751
TU22849 lncRNA downstream 415504 13396617 ~ 13398182 (-) False G16751
TU22835 lncRNA downstream 453467 13318063 ~ 13360219 (-) True G16737
TU23068 lncRNA upstream 82707 13905204 ~ 13905788 (-) True G16888
TU23067 lncRNA upstream 82760 13905257 ~ 13905788 (-) False G16888
TU23069 lncRNA upstream 83407 13905904 ~ 13908030 (-) True G16889
TU23088 lncRNA upstream 105846 13928343 ~ 13928714 (-) True G16898
TU23080 lncRNA upstream 128564 13951061 ~ 14016471 (-) False G16894
XM_039823190.1 mRNA downstream 1917 13765544 ~ 13811769 (-) True prx
XM_039783404.1 mRNA downstream 51318 13741519 ~ 13762368 (-) True si:ch211-14c7.2
XM_039782114.1 mRNA downstream 76293 13719887 ~ 13737393 (-) True kcnk6
XM_039824503.1 mRNA downstream 119650 13582022 ~ 13694036 (-) False LOC120574254
XM_039824552.1 mRNA downstream 187256 13576093 ~ 13626430 (-) False LOC120574254
XM_039780014.1 mRNA upstream 3419 13825916 ~ 13838806 (-) False pld3
XM_039780023.1 mRNA upstream 3419 13825916 ~ 13838806 (-) True pld3
XM_039791720.1 mRNA upstream 72537 13895034 ~ 13899904 (-) True foxa3
XM_039783199.1 mRNA upstream 85632 13908129 ~ 13912626 (-) True irf2bp1
XM_039822643.1 mRNA upstream 137273 13959770 ~ 14044832 (-) False nova2
TU22995 other downstream 59070 13662907 ~ 13754616 (-) False si:ch211-14c7.2
TU23000 other downstream 105646 13701643 ~ 13708040 (-) True G16871
TU22833 other downstream 478547 13322868 ~ 13335139 (-) False sae1
TU22775 other downstream 551862 13248603 ~ 13261824 (-) False ccdc9
unassigned_transcript_91 other downstream 809397 13004217 ~ 13004289 (-) True trnak-uuu_5
TU23133 other upstream 259466 14081963 ~ 14086764 (-) False gpr4
XR_005641363.1 other upstream 1496343 15318840 ~ 15325798 (-) True si:ch1073-145m9.1
TU23599 other upstream 1873057 15695554 ~ 15706455 (-) False G17287
TU23600 other upstream 1873057 15695554 ~ 15714263 (-) False G17287
TU23589 other upstream 1880112 15702609 ~ 15714263 (-) True G17287

Expression Profile