RNA id: TU23184


Basic Information

Item Value
RNA id TU23184
length 298
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G16975
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 14420458 ~ 14420755 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GctctttcactgtttttcattttgaaaaatataacATACTGATGTCCCATGATGTGCCGACTTAAAATGGATGTAGATCTGCAAATAGAAGTCTGAAAAGTCCATACTTTTACACCCTGCTGTGAATAGTTTGTAAATGTAGCAACCTACTCAAAAGACATTGCCTGCTTCTtttccatcatccatccatccacctctttaaaaaagagagaaaaatactCAAAAACCGATGGCTACAGTATGTTTCACAGTAACTGTTCAGCTTATTCCCTCCTCAAGTGCTCCGTAGCAAAATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23159 lncRNA upstream 75598 14342616 ~ 14344860 (+) True G16954
TU23097 lncRNA upstream 338593 14077618 ~ 14081865 (+) True G16907
TU22963 lncRNA upstream 453576 13948820 ~ 13966882 (+) True G16849
TU22962 lncRNA upstream 474019 13941949 ~ 13946439 (+) True G16848
TU22958 lncRNA upstream 510351 13906685 ~ 13910107 (+) True G16845
TU23187 lncRNA downstream 12850 14433605 ~ 14434209 (+) True G16978
TU23188 lncRNA downstream 13662 14434417 ~ 14434729 (+) True G16979
TU23189 lncRNA downstream 14467 14435222 ~ 14435534 (+) True G16980
TU23194 lncRNA downstream 28726 14449481 ~ 14450646 (+) True G16984
TU23195 lncRNA downstream 30954 14451709 ~ 14498688 (+) True G16985
XM_039792295.1 mRNA upstream 487 14416350 ~ 14419971 (+) True sbds
XM_039790054.1 mRNA upstream 175720 14225405 ~ 14244738 (+) True galnt17
XM_039789741.1 mRNA upstream 206215 14204430 ~ 14214243 (+) False rhbdd1
XM_039792442.1 mRNA downstream 42897 14463652 ~ 14464390 (+) True LOC120553742
XM_039792343.1 mRNA downstream 49284 14470039 ~ 14471276 (+) True LOC120553681
XM_039792355.1 mRNA downstream 60048 14480803 ~ 14482139 (+) True LOC120553687
XM_039821102.1 mRNA downstream 81180 14501935 ~ 14519927 (+) True gipr
XM_039821108.1 mRNA downstream 81180 14501935 ~ 14519927 (+) False gipr
TU22889 other upstream 858043 13556279 ~ 13562415 (+) True G16788
XR_005641732.1 other upstream 1283424 13107862 ~ 13137034 (+) False hif1al
unassigned_transcript_90 other upstream 1417051 13003335 ~ 13003407 (+) True trnak-uuu_4
unassigned_transcript_88 other upstream 1422590 12997796 ~ 12997868 (+) True trnak-uuu_2
TU22607 other upstream 1497989 12909640 ~ 12922469 (+) True G16590
TU23190 other downstream 15292 14436047 ~ 14441693 (+) True G16981
TU23191 other downstream 15292 14436047 ~ 14441693 (+) False G16981
TU23312 other downstream 337512 14758267 ~ 14760824 (+) False rasgrp4
TU23488 other downstream 1044948 15465703 ~ 15542486 (+) True G17201
TU23612 other downstream 1402936 15823691 ~ 15832614 (+) False LOC120553974

Expression Profile