RNA id: TU23187


Basic Information

Item Value
RNA id TU23187
length 605
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G16978
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 14433605 ~ 14434209 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACTGCTGGTCTCCTCCAAATCTGGATGTAAAACCCCTAAAAGTAAAGGATAAGGCTCCTTTATGACCTTTCTTATAAGTATTATAAGTTTAGTTTGTTATCCTTTTGTGTTAAGACACACCAGTGAGCCACACCACTGCACTGAGTAATACATTCCTACACTACGGTGAACATGGGCACAGTAGATCACTTGTTGTCAATCCAAcatacaccgtcctgctgctTTAAAGGGTAATTTGTTTTCAACCTAGACATTATTTTcctatatttttgtgtgtaagtgattGATGGGAActacaatctttgaaattggttcAGTATTACGCGAGAATGCTGTGACcagcagccacagaccgggctgcaatgtaatcctattgggcaaatgtgcatcgtcaattttgTCCActaatgctacgtttacacgtggccggctattttttgataaacggacatttcaacctctccgttttcaaaaataacattgtgcacagctgtcagttttcagaaaagtgtttgtttacatgtacccgtgtatatatgccgtcaatgcagtcaagagcatgccaaacatgtaggtggcagtgtaacgagaagctcaagcccac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23184 lncRNA upstream 12850 14420458 ~ 14420755 (+) True G16975
TU23159 lncRNA upstream 88745 14342616 ~ 14344860 (+) True G16954
TU23097 lncRNA upstream 351740 14077618 ~ 14081865 (+) True G16907
TU22963 lncRNA upstream 466723 13948820 ~ 13966882 (+) True G16849
TU22962 lncRNA upstream 487166 13941949 ~ 13946439 (+) True G16848
TU23188 lncRNA downstream 208 14434417 ~ 14434729 (+) True G16979
TU23189 lncRNA downstream 1013 14435222 ~ 14435534 (+) True G16980
TU23194 lncRNA downstream 15272 14449481 ~ 14450646 (+) True G16984
TU23195 lncRNA downstream 17500 14451709 ~ 14498688 (+) True G16985
TU23281 lncRNA downstream 203220 14637429 ~ 14638924 (+) False LOC120547056
XM_039792295.1 mRNA upstream 13634 14416350 ~ 14419971 (+) True sbds
XM_039790054.1 mRNA upstream 188867 14225405 ~ 14244738 (+) True galnt17
XM_039789750.1 mRNA upstream 219362 14205349 ~ 14214243 (+) False rhbdd1
XM_039792442.1 mRNA downstream 29443 14463652 ~ 14464390 (+) True LOC120553742
XM_039792343.1 mRNA downstream 35830 14470039 ~ 14471276 (+) True LOC120553681
XM_039792355.1 mRNA downstream 46594 14480803 ~ 14482139 (+) True LOC120553687
XM_039821102.1 mRNA downstream 67726 14501935 ~ 14519927 (+) True gipr
XM_039821108.1 mRNA downstream 67726 14501935 ~ 14519927 (+) False gipr
TU22889 other upstream 871190 13556279 ~ 13562415 (+) True G16788
XR_005641732.1 other upstream 1296571 13107862 ~ 13137034 (+) False hif1al
unassigned_transcript_90 other upstream 1430198 13003335 ~ 13003407 (+) True trnak-uuu_4
unassigned_transcript_88 other upstream 1435737 12997796 ~ 12997868 (+) True trnak-uuu_2
TU22607 other upstream 1511136 12909640 ~ 12922469 (+) True G16590
TU23190 other downstream 1838 14436047 ~ 14441693 (+) True G16981
TU23191 other downstream 1838 14436047 ~ 14441693 (+) False G16981
TU23312 other downstream 324058 14758267 ~ 14760824 (+) False rasgrp4
TU23488 other downstream 1031494 15465703 ~ 15542486 (+) True G17201
TU23612 other downstream 1389482 15823691 ~ 15832614 (+) False LOC120553974

Expression Profile