RNA id: TU23190


Basic Information

Item Value
RNA id TU23190
length 3410
RNA type TUCP
GC content 0.43
exon number 2
gene id G16981
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 14436047 ~ 14441693 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAGAATCTAatttatgtaaatgtttaattaaaagtaaataaaaacagtctTTTGATGTTTCATTGAACCATGATAttgttaaaatattttatacTTTAAATTCACAATATATCAAGGGTGCTGTACAAGTTTGATTCCATCATACCCCTAGTTCACCATTAACATCCTTCTTGCACAACTGAGATTTACATTCAGAGAAAAATTAGGTTTGATACACACTTTATATAGAATAGCTCTCATTCAATCCAGTCATCGTGCTGTTGGAAGATTTTCTTGTCGGTACAGTAGTTTCACACTACATCTTTTGTAATGTTTTCTCGTTCCTCAAGAAACACTCTCTTGCCTCCACCAAAGAAATCTGAATTCATCAGAAAACAGTTCTGTGTGTCACTAAAAGAAAAGCAACTTGTGATGCAATCATAACCTTACAACGAAGGAGGGTAACTcaagaaaagtaaaataattagAAGTCTTTCTTAGGAGAGAGAATGGGCTTCTCAGACATAGGCCCGGCTGGTGGCTTCGGACCTGGCACCAGAGTACTTGACTGGATACTCTGGGCTGTTGTTGGCTGGGCAGGAGCTGCAGAGGAGGCCACCACCCAAGATGAGAAGCCCAGCTGTGCCCCAGCCGATGTAGAGTGAAGCCCCCAACTCTCTCCTCTGGGCTTCGATTAAGGTAGGGTTGTAGAAATCCCGGATAATGGTGTTGGCAGACCAGCAGACGGGGATGAGGACAAGTAAACCGGAAATAATGAAGAGGATTCCTGCCGCAATGGCCACCTTGACTTTAGAATTTTCATTCTCTACAAAGTTGGTGCACTTGCCTCCCATAATCCCCAAGAGGATTCCCAAGACAGAAGCGATGATGGCCATGACCGTAAGAGCTCTGGCAGCCTGAAGGTCCTGCGGTAGAGCCAGCAGAGAATCATAGACCTTGCACTGCATCTGGCCTGTACTCTGCGTCACACAGTTCATCCACAAGCCTTCCCAGATGACCTGCGCTGTCACAATGTTGGCTCCAATGAAGGCTGTAACCTTCCACATGGGCAGGATACACACGATGATGGTCCCCAGGAAGCCAATGATGCCCATGGCAAAGCCAAGCATCTGTCGTCCCATTGACACCATGATGAGGTCTTGTTTGAAGCACTTGAACAGGAGCAGAAGAGTTGAAGTTTGAAGGAGCAGGTCAGCACAGCTCGGGTTGTAAGGTGGAATACAGACTGTTTGCTGTGCTTATAAGGATGTCTTACGTGAAGGTGGAGTCAGAACATTCTTCCCTCTGACCTGAAACCGGTGCACTGGCCCAACCAGATTCTTCACATTATCTGTACGCGGACAGGGAGTAGTTTCGACGAGATGACACCAGCCTTAAATGACTTTATGTAAATGAAGCCCGTAAAGAGGCAATTGGAACAATAGCCTGCCAGTGGCCATcgttttgtttgtgtatgttacCTGAAGATCAGGTCCAGTCACTTGtttcaggtttaaaaaaaaacaccaacgtGGGTGGGACTATCACCGGATGTCAGATGTTAACGGAAGGAACGTCCATTTATGGTTTTACTAATTACTTCTCTTTGATTATCCCTATATATGATAGGCCTATACTATTCAAGGAatggattgttttgtttttcaatcaGAATGACAGTCCTCATTGAGATTAGATCACAAGAAAAACCTTTTTTGTATCGTCATTACTTAACAGGGTTTTTCATGTCTGTGTATTTCAGATTACAGTGAAATAAcacatcaaataaaataaataaagattgttttataaaaacctttgtttttttctatcgTCTTTATTGAACAGGGTCTTTCATGTCTCTATGTATTTCAGATTACAGTGAAATAacacacaattaaaataaattaagattGTTTTATAAAAACCTTTGTTATTATTCTTATAGGTTTATAGAGGACGATTTATAtggattattttttcatttctacCTCTCACTCACCCAGACACAAAAGTGCCCTGACCATGTAAAATGTCAGATGTTTTCATAGCATTGTATAAAATAGCAACGATATGTTGTGATAATGACTGCACATTATATATGAATATACtacaaacattttattgaaaaataGTTGCATTTATAGAAAAACATCACAAATCATCGCTATTTACAAAATCTGCTCTGTATTACAAGATAAATACATAGAAAGTGGCATCCCAGCCGTATGAGAAGCAAGGCCATGTTGACATATTTCTCTTATATAAAGACTTCATGAACTTCTTAAATGTCTACTTTAGAGCACAAAATCAATCcaaaagagaaaacatttaataaaagaTTTCTAATAATTAAAAGGTCACAGTGATTGTTTAAGTGAATATATTTTAAATCCCAACAATGTATTGGAATACATACCATCCTCTAGAAATACAATGTTTATTTTGGTGCAATTTTACTGTCTAATGACATAAGTTCCTAAAGCCATCCTCGCAAAAAAATCATTGTCCTCTTTGTCCTTTCCATTTTTAGAGGTATTGTCTTGCAGTGTATGTAGGTGGTGCTGCATACAGTTTGTTAGGTGCATATGTCCCAGTGCCTGTGTACGTTTGGCTGGATGGGGGAGCATACACAGGGGCATATGTTACCGGGTTTGGCCCTGGGCCAGTGTAAGGGTACGTAGGTGCTGGTGGATAGCCTGGGTATCCATACATGGGTTTTTGCGGAGGGCACGACGTGGTTAGGATGATCCCACCGATCAGAAGAAACACTGCAGAGCCCCAGCCGATGTAGATGGCGGCTCCAAGTTCCCTCTGCTGTGTATTAAGGGTCAAGGGGTTATTAAAGTTTATGATGGTGACTGCTGCAGACCAGGAGGCGGGGATCAGGACCAGGATGGCAGAAACAATGAGGAGACAGCCACCTGTGATCACCACATTTGCCTTTGATGAATCGTCCTTTAGGCAGCTGGTGCACCTGGCTCCAACGAAGGTAATCATGAAGCCGATAAAGCCGACGATGAGCGAGATGATGACCAGGGCTTGGGCGGCTTGCAGATCCGCGGTCATAGTCATAATAGCGTTATTCAGCCTGCACTGCATCTGCCCAGTGCTCTGCATCACACAGTTCATCCACAGGCCGTCCCAAATGATCTGGGCTGTCGTGATGTTAGCTCCAATGTAGGTGGTCACTCTCCACATGGGGATCCCACAGGTCACTGCCACCCCAATAATGCCTATGAAGCTCATGACCTGACCGGCCACTTCCTTGCCAATCCTTCCCATGGTAAAGAGACTTTGTCTGCGGCAGGAGAGAAGAGCGTTTCAGCATACAGATCGGGTCCTCTTTCGGAGTGACACAGCTCTCTCACTTGTTGCTTGTCAGGGAATGTACAGGAGGAGGGATGATTCCTCGTCAGGCGAGTTCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23189 lncRNA upstream 513 14435222 ~ 14435534 (+) True G16980
TU23188 lncRNA upstream 1318 14434417 ~ 14434729 (+) True G16979
TU23187 lncRNA upstream 1838 14433605 ~ 14434209 (+) True G16978
TU23184 lncRNA upstream 15292 14420458 ~ 14420755 (+) True G16975
TU23159 lncRNA upstream 91187 14342616 ~ 14344860 (+) True G16954
TU23194 lncRNA downstream 7788 14449481 ~ 14450646 (+) True G16984
TU23195 lncRNA downstream 10016 14451709 ~ 14498688 (+) True G16985
TU23281 lncRNA downstream 195736 14637429 ~ 14638924 (+) False LOC120547056
TU23394 lncRNA downstream 697473 15139166 ~ 15139536 (+) True G17131
TU23435 lncRNA downstream 943770 15385463 ~ 15386345 (+) True G17159
XM_039792295.1 mRNA upstream 16076 14416350 ~ 14419971 (+) True sbds
XM_039790054.1 mRNA upstream 191309 14225405 ~ 14244738 (+) True galnt17
XM_039789741.1 mRNA upstream 221804 14204430 ~ 14214243 (+) False rhbdd1
XM_039789750.1 mRNA upstream 221804 14205349 ~ 14214243 (+) False rhbdd1
XM_039789733.1 mRNA upstream 221804 14205349 ~ 14214243 (+) False rhbdd1
XM_039792442.1 mRNA downstream 21959 14463652 ~ 14464390 (+) True LOC120553742
XM_039792343.1 mRNA downstream 28346 14470039 ~ 14471276 (+) True LOC120553681
XM_039792355.1 mRNA downstream 39110 14480803 ~ 14482139 (+) True LOC120553687
XM_039821102.1 mRNA downstream 60242 14501935 ~ 14519927 (+) True gipr
XM_039821108.1 mRNA downstream 60242 14501935 ~ 14519927 (+) False gipr
TU22889 other upstream 873632 13556279 ~ 13562415 (+) True G16788
XR_005641732.1 other upstream 1299013 13107862 ~ 13137034 (+) False hif1al
unassigned_transcript_90 other upstream 1432640 13003335 ~ 13003407 (+) True trnak-uuu_4
unassigned_transcript_88 other upstream 1438179 12997796 ~ 12997868 (+) True trnak-uuu_2
TU22611 other upstream 1513578 12868872 ~ 12922469 (+) False G16590
TU23312 other downstream 316574 14758267 ~ 14760824 (+) False rasgrp4
TU23488 other downstream 1024010 15465703 ~ 15542486 (+) True G17201
TU23612 other downstream 1381998 15823691 ~ 15832614 (+) False LOC120553974
TU23613 other downstream 1381998 15823691 ~ 15832704 (+) False LOC120553974
TU23615 other downstream 1381998 15823691 ~ 15832704 (+) False LOC120553974

Expression Profile