RNA id: TU23388


Basic Information

Item Value
RNA id TU23388
length 1532
lncRNA type inter_gene
GC content 0.54
exon number 5
gene id G17128
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 15131079 ~ 15136613 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCGAGCATGTGCTGGGACAGATGGAAGGGAAAGGGGTTGGGCGTTCCTCCTGTGCCCTGGGCGGAGAGGCTGCCATTTTCCAAACCATTTACAGAGGCCAATAGATGCCCCATGCCCATagcagaaaaggctccaggggCCATGGCAAACTGCCCGGGGTGAAACAACAGCGGTGATCCGGCGCCCAGAGGGTTAAAGAACTGCTGACTGTGTAGgccagacagagccaggctttGTAAGTGGCCTGGGCTGAAGTGCGAGGGGCTCTCGGTCTGGACCATGAGAGGGGAGAAGGCCTCCTTAGTGGCACTAATGCCTCCGGCCTCTGAGTCCTTTGTCAACACGTCCGTGGTGTCCTTCCTGTGCCTGCCCTCCGCTTTGTCCTTCTCAAGGTTTCTTATACTGAATAAAGAGtcatccttcttttctgtgcTAGGCCTGTCCCTGATGCGCTCCTCACACCTGGAGCTGTAGGGGGACACAGGTTCAGGTCCCGGGCTGTTGGAGCCAGTGCAGCGCTCGTCTTGATGCTCCAGCTCCTGCTCGCTGTCAGTGCACGTTTTATCATCTACTCGACTGGGCCTGCTGAACCTCAGCGGGCTGGTGTCGGCTCCCAGCGGGGAGTGGACGGCGTCCCTGCCGGTCGGAGGCTCACTGGACGAGGCGTCTGAGTCCGCGCCTTCCCGGTCCGCCTTGCATTGGTCCTCATACATCCGCAGCGACGGCATGGTTAGCTGTTTCcttttctctctccttccattccCCGTGTCTCGGAATCCTTTGGCGAAAGGGTTGTTGTCAATCTTCAGCTGCGTTATCTTGTCATTTTGATATGCTGTCACAGCCACGAACTCGGTCTCCGGGAAGACGTAGGTCCTGAAGGTGCTGTAAGGGAGCTTCAGGATGTCGTTGGCCCGCACTATGTGGAACCTGGGCTGGTACTTGTGCATTGAGTTCAGGATGGTCtggacAAATCCGTGTTTGTCTGAAATGTTGTTGGTCAGCTTGAGTTTATGAAAAGCAACAGGCTTGGCCATCCACTGCTCGCCGGTGGCCGGGCTGTCCGGGTGGATATACATCCTCTTGGGCATCTCCGGGTCGGCCTTGCCCGCCACCATCCAGCGGGAGTTGTGGAACTTGTAGCGGCAGTCGTCCGCCGCCACAATGTCCATCAACAGGATGTATTTGGCTTTTTTATCGAGTCCATTTATTCGCACTTTGAACGGAGGGAACATCCTCCTGCAGAATAAAACACACAGGGAGTCAACACACTGTGGTTCAACCAAAACGCAACATCATATTATCATACAAGACTTGAACATATTTGACAAAAGAGGCACTGAAGGCAACGCGGACGCAGAAAAACACGCCGCtctgaaaagagaaaatattgTAATTGTCAGATATTATTCTCCAGTGTTGCACGCAATTAGGCGACAGCAAAaccatagtgtgtgtgtatgtgtgtctgtggtgtctgtccgcctgtgtgtgtgtgtgtgtatgtatgtgtgtgcgtgcgtatgtgtTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23386 lncRNA downstream 1585 15119868 ~ 15129494 (-) True LOC120572551
XR_005641463.1 lncRNA downstream 2104 15122198 ~ 15128975 (-) False LOC120572551
TU23356 lncRNA downstream 464476 14642911 ~ 14666603 (-) True G17106
TU23349 lncRNA downstream 492136 14637911 ~ 14638943 (-) True G17104
TU23270 lncRNA downstream 581585 14549249 ~ 14549494 (-) True G17037
TU23395 lncRNA upstream 2521 15139134 ~ 15139333 (-) True G17132
TU23437 lncRNA upstream 47127 15183740 ~ 15184521 (-) True G17161
TU23438 lncRNA upstream 48035 15184648 ~ 15185567 (-) True G17162
TU23439 lncRNA upstream 49044 15185657 ~ 15186504 (-) True G17163
TU23447 lncRNA upstream 177539 15314152 ~ 15317886 (-) True G17171
XM_039783680.1 mRNA downstream 353702 14775034 ~ 14777377 (-) True opa3
XM_039783605.1 mRNA downstream 358291 14758259 ~ 14772788 (-) True LOC120547856
XM_039783585.1 mRNA downstream 358291 14759047 ~ 14772788 (-) False LOC120547856
XM_039783596.1 mRNA downstream 358913 14758259 ~ 14772166 (-) False LOC120547856
XM_039826075.1 mRNA downstream 397941 14649516 ~ 14733138 (-) False ryr1b
XM_039821859.1 mRNA upstream 50838 15187451 ~ 15281915 (-) True brip1
XM_039790856.1 mRNA upstream 146133 15282746 ~ 15292215 (-) False ppm1da
XM_039790847.1 mRNA upstream 146133 15282746 ~ 15292215 (-) True ppm1da
XM_039821276.1 mRNA upstream 182227 15318840 ~ 15325799 (-) False si:ch1073-145m9.1
XM_039777802.1 mRNA upstream 402040 15538653 ~ 15624260 (-) False sgsm2
TU23133 other downstream 1044315 14081963 ~ 14086764 (-) False gpr4
TU23022 other downstream 1308022 13816096 ~ 13823057 (-) False G16880
TU22995 other downstream 1376463 13662907 ~ 13754616 (-) False si:ch211-14c7.2
TU23000 other downstream 1423039 13701643 ~ 13708040 (-) True G16871
TU22833 other downstream 1795940 13322868 ~ 13335139 (-) False sae1
XR_005641363.1 other upstream 182227 15318840 ~ 15325798 (-) True si:ch1073-145m9.1
TU23599 other upstream 558941 15695554 ~ 15706455 (-) False G17287
TU23600 other upstream 558941 15695554 ~ 15714263 (-) False G17287
TU23589 other upstream 565996 15702609 ~ 15714263 (-) True G17287
XR_005637173.1 other upstream 909395 16046008 ~ 16060408 (-) False sdhdb

Expression Profile