RNA id: XM_039818446.1



Basic Information


Item Value
RNA id XM_039818446.1
length 801
RNA type mRNA
GC content 0.42
exon number 4
gene id lyrm9
representative False

Chromosome Information


Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 15646641 ~ 15651047 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


gcagagtaaggTGGGTCATGCCGTCGCCATCCTTGGAAAACCCAAATTTGCGGCACATTGGTGTTGTTTACTGGGCTAGTGACTCCAAGGAGGTTTTTACGATTCTGAGCGCCTGCTGACAGCCTTCCCTACAGTTGACAGAGATACTCAGTTTAACCGAAGGAGGAAGGCATGCTGCCTTTAGTTGGAGCTGAGTTGACACCAGTGCAGCTCTATCGACATCTCCTCAGATGTTGCAGGCAGTTACCAACCCCAGCAATGCAGAAACATTATCGACATGCCATAAGACAGGGTTACATCAGTCACTCCGATGAAGACGACCAAGAGAGGATACAAATGATAATCCAAAGAGCTATTGCTGATGCAGACTGGATTCTTGATAAATATACAAAGAAGAAGTGAAGTTCATAATCCATGAATACGTCCTCGGGTGTAGCATTTTGCAGAGCTGCACCTGACATGAATCATAGTGGTGGATGCACCGTTTCTATGTCTGACTTTTGAGTGCCCATTGTGTTATTTGTCCTCGTTATTGTGGGGATGTGAACAGTCATGGTCAAGTCAGCTTTATTGTCAGATGTGCTATACATGAAATTTCAGTCCTCTCGGACCCCCGGTGCAAAGCAAACATGATGAAAGGAAGGCCTCACGAGTCATCGACTCTTATACTATACTGTATGAAATGACTGCTCAATTGAATATAATATTCactatctataaaaaaaaaagtgtaaatacTGTTCTTAGATTGAAATGAGTTGACTATATACtgaattcaataaattattctCAATATGTATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU23557 lncRNA downstream 3651 15642003 ~ 15642990 (-) True G17264
TU23545 lncRNA downstream 111414 15533876 ~ 15535227 (-) True G17253
TU23515 lncRNA downstream 205131 15434214 ~ 15441510 (-) True G17225
TU23512 lncRNA downstream 250302 15396102 ~ 15396339 (-) True G17222
TU23511 lncRNA downstream 253221 15393206 ~ 15393420 (-) True G17221
TU23597 lncRNA upstream 59737 15710784 ~ 15719041 (-) False G17287
XR_005637445.1 lncRNA upstream 62085 15713132 ~ 15714089 (-) True LOC120549843
TU23748 lncRNA upstream 365875 16016922 ~ 16048016 (-) True G17389
TU23849 lncRNA upstream 749576 16400623 ~ 16400836 (-) True G17466
TU23886 lncRNA upstream 766248 16417295 ~ 16418742 (-) True G17499
XM_039777815.1 mRNA downstream 8685 15626090 ~ 15637956 (-) True tnfaip1
XM_039777802.1 mRNA downstream 22381 15538653 ~ 15624260 (-) False sgsm2
XM_039777788.1 mRNA downstream 22381 15538653 ~ 15624260 (-) False sgsm2
XM_039777786.1 mRNA downstream 22381 15538653 ~ 15624260 (-) False sgsm2
XM_039777775.1 mRNA downstream 68189 15538653 ~ 15578452 (-) True sgsm2
XM_039818972.1 mRNA upstream 426 15651473 ~ 15682792 (-) True LOC120570576
XM_039786991.1 mRNA upstream 44757 15695804 ~ 15698453 (-) True LOC120549823
XM_039786999.1 mRNA upstream 44757 15695804 ~ 15698450 (-) False LOC120549823
XM_039786956.1 mRNA upstream 51932 15702979 ~ 15706276 (-) True LOC120549813
XM_039786967.1 mRNA upstream 51932 15702979 ~ 15706269 (-) False LOC120549813
XR_005641363.1 other downstream 320843 15318840 ~ 15325798 (-) True si:ch1073-145m9.1
TU23133 other downstream 1559877 14081963 ~ 14086764 (-) False gpr4
TU23022 other downstream 1823584 13816096 ~ 13823057 (-) False G16880
TU22995 other downstream 1892025 13662907 ~ 13754616 (-) False si:ch211-14c7.2
TU23599 other upstream 44507 15695554 ~ 15706455 (-) False G17287
TU23600 other upstream 44507 15695554 ~ 15714263 (-) False G17287
TU23589 other upstream 51562 15702609 ~ 15714263 (-) True G17287
XR_005637173.1 other upstream 394961 16046008 ~ 16060408 (-) False sdhdb
XR_005637172.1 other upstream 398825 16049872 ~ 16060408 (-) False sdhdb

Expression Profile