RNA id: TU24024



Basic Information


Item Value
RNA id TU24024
length 547
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G17571
representative True

Chromosome Information


Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 16696813 ~ 16698009 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CAAGAGTATGTAATTTttggagaaaataaatacagttcTATTGTAATCTTTAGTATAGATTCCACTGTTATTTCTAATTAAATGGGATAATGTGTGACACAATGTtgcaaaataagaaaacacatgttGGAATGGATCCATCACTGGGTCAGCAACCTTCAAAGCAGCTTGGTAGGTTTACCTAAAGGGGCTGTGGTTGTACTACTGACCCAGAGCTTCACCAGGAGCTCATATTCTGGTTCAATCAAAACTAAAACCTGCACCATTATCAAACCGTATCACCGATACTGTTTATGAATGAGACctaaagaaaggaaagactgTTCAAACACTCACCAGCTGATTGACCGGTCTTAACTTGGAATCCAGTGTGATGACTCTGAAATGCACTGTTGTCCTGGGAGGTAGATTGGTTTATCTGTTTGGATGAATGTCATTGGTCGATAGACTTTGATCTTAACTTTTCGGACTTCTTTAGAGTAGAATGTGTCGCCTCGTACCTCCACCACAAAATTCTGCACCACTTCATCCTGCACTAAAGGAACCT

Function


GO: NA

KEGG:

id description
ko00140 Steroid hormone biosynthesis
ko04913 Ovarian steroidogenesis
ko04927 Cortisol synthesis and secretion

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU23886 lncRNA downstream 278071 16417295 ~ 16418742 (-) True G17499
TU23849 lncRNA downstream 295977 16400623 ~ 16400836 (-) True G17466
TU23748 lncRNA downstream 648797 16016922 ~ 16048016 (-) True G17389
TU23597 lncRNA downstream 977772 15710784 ~ 15719041 (-) False G17287
XR_005637445.1 lncRNA downstream 982724 15713132 ~ 15714089 (-) True LOC120549843
TU24054 lncRNA upstream 12760 16710769 ~ 16766469 (-) True G17579
TU24067 lncRNA upstream 22209 16720218 ~ 16935713 (-) True G17583
TU24076 lncRNA upstream 23565 16721574 ~ 16736425 (-) False G17587
TU24077 lncRNA upstream 23565 16721574 ~ 16755316 (-) False G17587
TU24078 lncRNA upstream 23565 16721574 ~ 16736425 (-) True G17587
XM_039784176.1 mRNA downstream 32131 16655490 ~ 16664682 (-) True usf1
XM_039784169.1 mRNA downstream 41473 16644120 ~ 16655340 (-) True LOC120548132
XM_039785575.1 mRNA downstream 52930 16599794 ~ 16643883 (-) False ubash3bb
XM_039785572.1 mRNA downstream 52930 16599794 ~ 16643883 (-) True ubash3bb
XM_039785583.1 mRNA downstream 53622 16599794 ~ 16643191 (-) False ubash3bb
XM_039788677.1 mRNA upstream 249747 16947756 ~ 16949836 (-) True LOC120551331
XM_039822492.1 mRNA upstream 457683 17155692 ~ 17162704 (-) True gemin4
XM_039818775.1 mRNA upstream 529515 17227524 ~ 17230365 (-) True tmem199
XM_039777970.1 mRNA upstream 774938 17472947 ~ 17478903 (-) True xaf1
XM_039777899.1 mRNA upstream 806790 17504799 ~ 17634049 (-) True LOC120544259
XR_005637173.1 other downstream 636405 16046008 ~ 16060408 (-) False sdhdb
XR_005637172.1 other downstream 636405 16049872 ~ 16060408 (-) False sdhdb
TU23600 other downstream 982550 15695554 ~ 15714263 (-) False G17287
TU23589 other downstream 982550 15702609 ~ 15714263 (-) True G17287
TU23599 other downstream 990358 15695554 ~ 15706455 (-) False G17287
TU24093 other upstream 150152 16848161 ~ 16930994 (-) True G17597
TU24264 other upstream 775727 17473736 ~ 17478844 (-) False xaf1
TU24398 other upstream 1434078 18132087 ~ 18151968 (-) False zgc:165508
TU24394 other upstream 1507573 18205582 ~ 18222854 (-) False LOC120545639
XR_005637451.1 other upstream 3104704 19802713 ~ 19810130 (-) False si:ch211-11n16.2

Expression Profile