RNA id: TU24263


Basic Information

Item Value
RNA id TU24263
length 2250
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G17714
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 17465020 ~ 17467491 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTACATTCATGTTGGCTCGCTAGAAGTCCCTGCATTTTGCATTGCTACGTTTCTTGGTGCATTACCTCCACCAACTGTCTATTATGAGAATAACATGAAACTGTCAGAAGGAATGTGGATCACGCCTGTGTTCTCATTCGCGCAACAATGATACAAAACAAGTGGGGATCCACTCATAAAAATATCGTGCAACAGTTCCactagtggtcaaaaactccacagggtacctttaaCAGCAATAGTATTGGCCCCCAAAACAACAGGTCTGTGAGCTCAGACAACATTCTGCAAAATAAACAAGCATTTCAGTCTTTTCTTTGCACAGACAATCTGACATTTGTCTTGAAAAGACTGTTAGCTCCACCTGCTGGTTTGTTTGATTTGCAGTATGTTACAGATGAAGATGATCTTCATTAAGTCTTTGAAAATTGGTCATGACTTactatattattaaaaaaagaggaTACTACTTTTAGCATCTTGTTAAAAGTAGCATGTGTGCACATACTGTAGTGCAGTTAGGTGAATTCAAAAAGGGGTGACATGATATATTAAGGGAGATGTGgacacaaatgtgtttttaacgCTTACTTAAAGCCAAACCATGTCCTGTAGAGCCtgtgaagttgaaaaaaaaggcaCAGATGCAATATATACAAATTACCATAATTAAGAGGCAAGTActagaaataaaaactattttaaattaTGATTAGTTAGGACTGATTATAATGATGTTACTAAAACAGTTACCTGCTGTCATAAGTATCGGAGTTTAAGTCAAACTTGTACGTGGGTTGAAAGTCCAGAGGACCTTCCTCAAACTCCTGGAGCATCTGTTCATTCTTCTTCATCATGGTCAACTGAGAACGACAACGCACACATTTCATGCTGTCACTAATTCCCAAattacaaatatacagtatcaaAGCATGAATAATAATATTCTGGCTGCTCATGCACAGATCATTTAAGTGTTGTGCTGGGATCCCTATGAACCCTCATATGAACAGGAGTTGATTATGCTGTAAACAGCTGAATGGTTCTGGAAGGGTCAAACCTGGTCTTTGCTCCACAGCAGGTTGTAGTTTTGATTGTTGATACAGGAGCGGACAAAGTGCATGCCATGGTCCTGAATTCGAAAGTTGAGATCTCCAAACCAGAACACCACCTGTGATCAACAATTCTTGAAGCCTTTTTACAGTCAAAGGTCTGTGTGTCCATGATGTACTCAAACTCATCCACTCTCTCTGTGGCATACTTCATGTGCGCAGCCAAGTGACAGTTGAGGAAACAGAGCATGTGGCCATAgaaagacagacggacagacacgCCACCTTTGTTACCCTGAGAGACAAACAGGAAGAGATGAGAAACAGAGGAACCACAAATTCTGTCAAACTACTCTGCACTGTTCCTTCAGTTTTTCACCTGTGTGAGAGACAAATCAGTGCTTTAACAACTAAGacagaaacaaaagacaaaattatCAACTTCTGACAAGTGCAACAGATGctatatttgacattttggggggaaaaactTAGCAAGTCAAACATTTAGGCTACTTCTGTTTCTGTAGTTCGGTTGACAAAGTAACACAAGTggaatgtgtgttttttgcatCCCATCCCTTATTGAAAGGGGAACTGTGCCAATTTTACACATTAGTGTGGTTACTAGTGTTAGGCagtactactgcatatgtgaagaaaaaaactgtGTAAAGCTCTCCAGAGGAAGCTGTGTTATAGTGATAAGTGATAAAATGTGAGTCAGCATCAGTTGGAGCTACTGAAGTCTACAAGtttgaaaaggaaaaagaatCCGGGGATGTGGAGTGAGCAGTAGAAGTGATCTTACCAGACCTCCATAGACCACTCCTCATCTCTGTTTAAGACTAGAGGCTACATTAGCGACCACTAGCAACATACTCCCGATTTTGCGACCAAACTGTTGGCGGTTGAGTTGCATTTTGGGTAATGAAAAGACCGAACAAGGAAAAAGAATGCTGCTGCATCTATTTTGATTGCTTTTTTAACTGTCCATTGTGAGTCTGACAGAATAACAcaagtgcaatgctaaatcagtggagtcctgtgtgtgtgtgtgtgtgtgtgtgtttctcaccCAGTAACCAAAAATgcctgtgcgtgtgtatgtggcCTGAATGTCTCTGATGAAGGGGACGTGCTCCAGTTTGGAgaagaagagcagcagcagacccTGCATTCTGATGGATgacacct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24245 lncRNA downstream 5632 17456595 ~ 17459388 (-) True G17701
TU24260 lncRNA downstream 8561 17453929 ~ 17456459 (-) True G17713
TU24256 lncRNA downstream 11093 17444392 ~ 17453927 (-) True G17710
TU24237 lncRNA downstream 21650 17393897 ~ 17443370 (-) True G17696
TU24265 lncRNA upstream 5188 17472679 ~ 17472946 (-) True G17716
TU24290 lncRNA upstream 225505 17692996 ~ 17693268 (-) True G17739
TU24297 lncRNA upstream 288677 17756168 ~ 17756432 (-) True G17745
TU24342 lncRNA upstream 333995 17801486 ~ 17801933 (-) False LOC120552194
TU24345 lncRNA upstream 376943 17844434 ~ 17849019 (-) True G17782
XM_039818775.1 mRNA downstream 234655 17227524 ~ 17230365 (-) True tmem199
XM_039822492.1 mRNA downstream 302316 17155692 ~ 17162704 (-) True gemin4
XM_039788677.1 mRNA downstream 515184 16947756 ~ 16949836 (-) True LOC120551331
XM_039784176.1 mRNA downstream 800338 16655490 ~ 16664682 (-) True usf1
XM_039784169.1 mRNA downstream 809680 16644120 ~ 16655340 (-) True LOC120548132
XM_039777970.1 mRNA upstream 5456 17472947 ~ 17478903 (-) True xaf1
XM_039777899.1 mRNA upstream 37308 17504799 ~ 17634049 (-) True LOC120544259
XM_039782585.1 mRNA upstream 198327 17665818 ~ 17743624 (-) True zgc:153039
XM_039790011.1 mRNA upstream 332508 17799999 ~ 17890661 (-) True LOC120552194
XM_039790020.1 mRNA upstream 336633 17804124 ~ 17890661 (-) False LOC120552194
TU24093 other downstream 534026 16848161 ~ 16930994 (-) True G17597
XR_005637173.1 other downstream 1404612 16046008 ~ 16060408 (-) False sdhdb
XR_005637172.1 other downstream 1404612 16049872 ~ 16060408 (-) False sdhdb
TU23600 other downstream 1750757 15695554 ~ 15714263 (-) False G17287
TU24264 other upstream 6245 17473736 ~ 17478844 (-) False xaf1
TU24398 other upstream 664596 18132087 ~ 18151968 (-) False zgc:165508
TU24394 other upstream 738091 18205582 ~ 18222854 (-) False LOC120545639
XR_005637451.1 other upstream 2335222 19802713 ~ 19810130 (-) False si:ch211-11n16.2
TU25100 other upstream 2669851 20137342 ~ 20141512 (-) False LOC120547993

Expression Profile