RNA id: TU24290



Basic Information


Item Value
RNA id TU24290
length 273
lncRNA type intronic
GC content 0.40
exon number 1
gene id G17739
representative True

Chromosome Information


Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 17692996 ~ 17693268 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


cctcataaccactgaaaactgtcaaaaaaatctaacccaaagtccaattattatggacgttatgtgactgataactgattgatatctgattgatcattgtttaggtacattaagttaccacgttaagctttttcacgttaagcgttagaatgtcccggctgctgttgagggaaactgtagtctataacttcctgagcgactgatcgtccatttttgccccctttacataataaatatggctatgaaatggaacatgaaatacataaatgaggc

Function


GO: NA

KEGG:

id description
ko04512 ECM-receptor interaction
ko04510 Focal adhesion
ko04974 Protein digestion and absorption

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU24265 lncRNA downstream 220050 17472679 ~ 17472946 (-) True G17716
TU24263 lncRNA downstream 225505 17465020 ~ 17467491 (-) True G17714
TU24245 lncRNA downstream 233608 17456595 ~ 17459388 (-) True G17701
TU24260 lncRNA downstream 236537 17453929 ~ 17456459 (-) True G17713
TU24256 lncRNA downstream 239069 17444392 ~ 17453927 (-) True G17710
TU24297 lncRNA upstream 62900 17756168 ~ 17756432 (-) True G17745
TU24342 lncRNA upstream 108218 17801486 ~ 17801933 (-) False LOC120552194
TU24345 lncRNA upstream 151166 17844434 ~ 17849019 (-) True G17782
TU24397 lncRNA upstream 434198 18127466 ~ 18132016 (-) False zgc:165508
TU24506 lncRNA upstream 689891 18383159 ~ 18383539 (-) True G17917
XM_039777899.1 mRNA downstream 58947 17504799 ~ 17634049 (-) True LOC120544259
XM_039777970.1 mRNA downstream 214093 17472947 ~ 17478903 (-) True xaf1
XM_039818775.1 mRNA downstream 462631 17227524 ~ 17230365 (-) True tmem199
XM_039822492.1 mRNA downstream 530292 17155692 ~ 17162704 (-) True gemin4
XM_039788677.1 mRNA downstream 743160 16947756 ~ 16949836 (-) True LOC120551331
XM_039790011.1 mRNA upstream 106731 17799999 ~ 17890661 (-) True LOC120552194
XM_039790020.1 mRNA upstream 110856 17804124 ~ 17890661 (-) False LOC120552194
XM_039790001.1 mRNA upstream 110856 17804124 ~ 17890661 (-) False LOC120552194
XM_039790030.1 mRNA upstream 110856 17804124 ~ 17863980 (-) False LOC120552194
XM_039822496.1 mRNA upstream 426029 18119297 ~ 18124891 (-) True LOC120573061
TU24264 other downstream 214152 17473736 ~ 17478844 (-) False xaf1
TU24093 other downstream 762002 16848161 ~ 16930994 (-) True G17597
XR_005637173.1 other downstream 1632588 16046008 ~ 16060408 (-) False sdhdb
XR_005637172.1 other downstream 1632588 16049872 ~ 16060408 (-) False sdhdb
TU23600 other downstream 1978733 15695554 ~ 15714263 (-) False G17287
TU24398 other upstream 438819 18132087 ~ 18151968 (-) False zgc:165508
TU24394 other upstream 512314 18205582 ~ 18222854 (-) False LOC120545639
XR_005637451.1 other upstream 2109445 19802713 ~ 19810130 (-) False si:ch211-11n16.2
TU25100 other upstream 2444074 20137342 ~ 20141512 (-) False LOC120547993
TU25187 other upstream 3400914 21094182 ~ 21097201 (-) True si:ch1073-340i21.1

Expression Profile