RNA id: XM_039790001.1


Basic Information

Item Value
RNA id XM_039790001.1
length 3585
RNA type mRNA
GC content 0.51
exon number 23
gene id LOC120552194
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 17799999 ~ 17890661 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGTGTGTGAGTAGGCCAACCATTAGAACAGCCTTGCTGTGACAGAAACTAAAGTCAGTCCAATGCTTTAATCACAGtccaacacacagagagacatatCGCTGTCGATTTCCTCTCGCTTTCAAGCTGAAAACGTTTCATCAAGTCGCCGGGTAGAGACAGCCGAGCCATGGCAGGGGACGGGTCGGACCAGCGGGCGCTGCAGTATGAACAAACTCTGAAGTATGGGAGCTACAGCGAGGACTTCGGGAAGTACACCAAAGAGGAGGCCGCTCGGCTGAGGGAGAGTGGGCAGAGACGATCTGTCAGCCGGACCCTCGACCCGCTGGAGTACGACAAGGGACGCTGTGCCAAGTGTCGCTTCTGCACGGTTCGCTGTCTGAAGGTCCTGATCTCATTTGTCGGGGAGGACTGGATCTTCCTCATCCTGCTGGGACTCCTCATGGCCCTGGTCAGCTGGGTGATGGACTTTGGCATCAACAGCTGTCTATATGcaCTGATGTGGATATACAATAGTCTGGACAGTAACGTGTTTCTGCAGTATCTGGCCTGGGTCATCTACCCTGTAGTACTCATCTGCTTCTCTGCCGGGTTCGTCCAGATTCTCGCCCCCCCAGCTGCTGGCTCAGGTATTCCAGAGATGAAGACCATCCTGCGAGGAGTTGTGATGAAGGAATACCTCACCTTAAAAGCTTTCGTGGCCAAAATCATTGGCCTCACCGCTGCTTTGGGCAGCGGCATGCCCCTGGGCAAGGAGGGTCCATTCGTACATCTCGGCGGTTTGTGCGCTGCTGTTCTCATGAGGTTCATGTCTCTGTTTGGGGAAATCTATGAGaatGAGTCAAGATACATTGAGATGCTGGCAGCGGCCTCTGCAGTGGGAGTGGGCAGCTGTTTTGCTGCCCCCATAGGAGGTGTGTTGTTCAGTATTGAAATAACATCCCAGTTCTTTTCGGTGAGAACCTATTGGAGAGGTATCTTTGCTGCTACCATCGGTGCCTTCATCTTCAGAGTACTGGCTGTGTGGAACACTGACGCAGAGACCGTCACAGCTCTTTTGAGAACCAGTTTCCGGCTAGACTTTCCATTTGGCCTCCAGGAGCTTCCTGCCTTCGGTGCCCTTGGtatTGCCTGTGGTTTTGGTGGGGCTTTGTTTGTCTACCTGAACGGAGTTATTGTCCGGTTCATCAAGAAACAGAAGGCCAACAATGGATTCCTCATGAAAAGaCATCTGCTGTATCCAGCACTGGTCACTTTACTTATTTCTACACTCACATTTCCCCCTGGCTTTGGACAATTTATGGCTGGAAAGCTGAACATGATGGAGACTATGGAGGCATTACTGGACAACCGGACGTGGGCTAAACAGGGCATCGCTGAGGAGGCTGAACACATGGGACACTCTGAAGCCTGGATAATCCCGCAGGTCAACGTCTTCGTCACCCTGGGCCTCTTTACTTTCATGAAGTTCTGGATGTCTGCCCTGGCCACCACCATGCCAGTGCCCTACGGATCCTTCATGCCAGTATTTGTCATTGGGGCAGGTTTTGGTCGTCTGGTTGGAGAAGGCATGGCAACCTGGTTCCCAGATGGCATTCACACAAATGGCACCAGCTACCCCATAGTGCCAGGAGGCTACGCTGCCGTGGGTGCGGCGGCCTTGTCGGGAGCGGTCAGCCACTCGGTTTCCACCGCAGTCATCGTGTTCGAGATGACCGGCCAGATCACCCACATCCTGCCAATTATTATAGCAGTGATCCTGGCCAACGTCGTGGCGCAGTCCCTTTCGCCCTCTCTCTATGACTCACTCATCAAGATCAAGAAGCTGCCCTACCTCCCAGAGCTGGGCTGGGGACACCACGAAAAGTATGATATTCACGTGGAGGACATGATGGAGCGGGACGTGCGGTACATCACACTCAACTGCAGCTACAGAGACCTGCATAATGTGCTACTGAAGGGTCACCTCAAGACTGTGGCACTAGTAGAATCAGCTgAGTCCATGATCCTGTTGGGCTCCATCGAGCGCGCCCAGCTCCAGGAGCTGCTCTCCCTGCAGCTCGGCCGCCCCTTACGATTAGTGAACATCAGGGAAGGAGCCGTCGAGGATAAGAAACGCCTGTCGGTCGTGTCAAACGACAGCAGCGAGAACAGCAGCCACCGGGCCAGTCAGGAGGTCCGCTTTCAGatCTCTACTGAGGACTCATCCTTAAGCCCTACTCGTCCAGTCCCTCAGAAGCCTCTCAAACCTGCACTGAAGAGATCCTCTGTGGTGGAGCAACCCACCGgtcCACATGATCATTCGGGCATTGCTTTCAAGAACCTGTACGGCACCATTCCAGACACAGAAGCAGACCTGGAGCACAACGTAGATGTGGAGGATGACATGACTATTAGAGAGATTACAGAGTTGGAGGAGAAGCAGCTTGATGACAAGGTCAATTTCAACAACTGCAAGATCGATGACGCCACGATCCAGTTGGTGGAGCGCATGTCGCTGCATAAGACCCACACCATCTTCTCCGTGCTGGGCCTCGACCACGCCTACGTCACCAGCATCGGACGCCTCGTGGGGGTGGTTTCCCTTAAAGAGCTTCACAAGACCATCGAGGGCTCTGTGAAAGTGGAGGGTGCGAAGGTGCGTCCTGCTCTGGCCAGCTTCCGGGACAAGGGCAAAAGCAGCAGTGAGAACGAAACCATCGATGTCCACAAGCTGAGGGATCGCCTCAGAAGCATGCAGCTGCCCCGCGATCACATCCCCTCCGAGTGAGGGAAagtagaggaggaagaggaagaagaagagcaggtagaggaggaggaggaggaggaggcattGAGATCTTTAATCTCACAAAGCCACGCAAATTCCAAAATCCTCAGGGCTTAGGATCAATATTTAATTATGGAAAAAGTCTTTCTGCTACTTACTCTCCACTATCTACTTTGCTTCATGGGACTCATGTTGGTTGATTCCAACAAGGTACTGGGAATAGGTTGAGATCTttaaaaagggattttttttttagcagactTGGTTTAGCTTGTGTATCTTTAGAATTGAGATCAAAGTTTGGACCTTTTGAAAAAGTCTTCCACTTGAGGATCGAAATTCATCAATGATGACAAGgaaaaataatgtgtgtatgtactgtacttcAAGTGTCAGTGTATGAAATGAGAAAATGTCAGTGTGCATGAAGAGGGAGGTAGCGAACGACTATTTCTTATAGAATTTTTTTATTGCCTTTAGAACACATTTATTCTTTGTTTTCCAGCTTGATTGATATACTTTATGACTAATCGGGTGGCCTGGGTTTAACTGGAATTTGCCATGGAACAATTCTTTTGTAAATTACTCAAAAAATTACTAATTAATTAACAGTTTGTCCCATTGACAAGCACTGGACTAAGGGGACTGGTGTTTAGTCTGCTGTTTCTTCATTTGACCTCTTTTCCTTCGTCTTCTCATCTCTTCACTGCGagtcttaaaggtgctctaagcgatgttgggtgacggcaccacttcttgttgacgttcaaagtattttcgatcaaacgaggctagctcgcccctccctcctcctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24342 lncRNA downstream 2191 17801486 ~ 17801933 (-) False LOC120552194
TU24297 lncRNA downstream 47692 17756168 ~ 17756432 (-) True G17745
TU24290 lncRNA downstream 110856 17692996 ~ 17693268 (-) True G17739
TU24265 lncRNA downstream 331178 17472679 ~ 17472946 (-) True G17716
TU24263 lncRNA downstream 336633 17465020 ~ 17467491 (-) True G17714
TU24397 lncRNA upstream 236805 18127466 ~ 18132016 (-) False zgc:165508
TU24506 lncRNA upstream 492498 18383159 ~ 18383539 (-) True G17917
TU24537 lncRNA upstream 702314 18592975 ~ 18593673 (-) True G17936
TU24573 lncRNA upstream 858537 18749198 ~ 18749401 (-) True G17964
TU24596 lncRNA upstream 1264301 19154962 ~ 19155251 (-) True G17986
XM_039782585.1 mRNA downstream 60500 17665818 ~ 17743624 (-) True zgc:153039
XM_039777899.1 mRNA downstream 170075 17504799 ~ 17634049 (-) True LOC120544259
XM_039777970.1 mRNA downstream 325221 17472947 ~ 17478903 (-) True xaf1
XM_039818775.1 mRNA downstream 573759 17227524 ~ 17230365 (-) True tmem199
XM_039822492.1 mRNA downstream 641420 17155692 ~ 17162704 (-) True gemin4
XM_039822496.1 mRNA upstream 228636 18119297 ~ 18124891 (-) True LOC120573061
XM_039786019.1 mRNA upstream 237045 18127706 ~ 18151955 (-) False zgc:165508
XM_039786037.1 mRNA upstream 237045 18127706 ~ 18151955 (-) True zgc:165508
XM_039786000.1 mRNA upstream 237045 18127706 ~ 18151375 (-) False zgc:165508
XM_039786010.1 mRNA upstream 237045 18127706 ~ 18150928 (-) False zgc:165508
TU24264 other downstream 325280 17473736 ~ 17478844 (-) False xaf1
TU24093 other downstream 873130 16848161 ~ 16930994 (-) True G17597
XR_005637173.1 other downstream 1743716 16046008 ~ 16060408 (-) False sdhdb
XR_005637172.1 other downstream 1743716 16049872 ~ 16060408 (-) False sdhdb
TU23589 other downstream 2089861 15702609 ~ 15714263 (-) True G17287
TU24398 other upstream 241426 18132087 ~ 18151968 (-) False zgc:165508
TU24394 other upstream 314921 18205582 ~ 18222854 (-) False LOC120545639
XR_005637451.1 other upstream 1912052 19802713 ~ 19810130 (-) False si:ch211-11n16.2
TU25100 other upstream 2246681 20137342 ~ 20141512 (-) False LOC120547993
TU25187 other upstream 3203521 21094182 ~ 21097201 (-) True si:ch1073-340i21.1