RNA id: XM_039786000.1


Basic Information

Item Value
RNA id XM_039786000.1
length 5189
RNA type mRNA
GC content 0.47
exon number 5
gene id zgc:165508
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 18127466 ~ 18151968 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGGAAATTGGGGAAAGAGATTTGTTAGATTGCTCTCCTAAAAGGCTCTACATGCAGCTGCAAAAATGGGCTGTATCAGCTCCAAAGCGCCAGTTGGTGAATGTTGATGACACCATTGAAATGTTACCAAAATCAAGAAGAGCTCTCACCATTCAAGAGATTGCTGCATTAGCGCGATCTTCCCTACATGGTATTTCACAGGTAGTGAAGGACCATGTGACAAAGCCTACAGCCATGGCTCAGGGCAGAGTGGCCCACTTGATAGAGTGGAAAGGCTGGTGTAAGCCTATGGACACTCCTGCAGCCCTGGAATCCGACTTCAACTCTTATTCTGACCTCACTGAGGGAGAGCAGGAGGCACGCTTCGCTGCAGgTGTGGCAGAGCAGTTTGCCATAGCGGAGGCTAAGCTGAGGGCCTGGTCCTCTGTGGACGGCGACGAATCTAACGATGACTCATATGATGAGGACTTTCTGCCATCCAACGAGCCCACCACACAGagcacagATGTGTTATCATATCCGCCCTACTTGAAGGACCTGATCCACAGCCAGCTTTGCCAACACCTAGGCCTGCGAGGGCCCTGTTGCGAGGGTGGAGGAGGCGGAGAGGGAGGTGGTAGCGGAGAGCCCTCCCCCACGGTAGGCTCCCCGGACACCTTGTGCTCCAGCCTCTGCAGCCTGGACGAGCACCACCCCCTTCTGCGTGACCTGGGCGGTCACCGCGGCACCCACTCCTACAGCAATGCCGCCGAGCTCGCGGCCAAGATCCTGTCGGCGCTGCAGGGAGGGGAGGAGCTGCTGCTGGCCCGACTTCAGAGGGCAGGGCAGAGCGGTCGTGGTGGGGGGGACAGCGGCTTCCATAGCCTTGGCGGGGGAGGGCGGGGCATCAGGCCCTGCGGGGGTCAGGACTCTCCTTGCTACTCCAGATCTTACTCTGAGACGTACCTGTCACCCGGCGAGGATGACGACACCCCCTGCAAGGACTATGAGAGCACTGTGTGCCAGGCAGACGGCAGCCCTGACTACGACCCACACAGGAGGGTCTCTGATGTGGCCTCCTCTGGGGTTGTGTCTCTcgatgaggaggatgaagaggaggaggagagggcagGAGAGCCAAACAACCAATGACTTCTCTCATCTCACCTCAGTGTTTAATCCCTCCAATCTCTTTGGAgggttttcttttttgcaacaacTTCCCCTCTCCTTCATGGCGTCTAAAAAGTTTGAACCTCTGTGCatgctgtttttttccctcGCTGACTGAAGCATAAATCATCCGTCTTTGCCTTACTTGCAGCATTTCAAATCCTCCTTACCACCTCGTGACTGCTTTGTCCCCATTCGATGTAtcaacttttattttctttgaagGCGTCCAAACAATCGattttatcattgtaaaacagGAGTGCTGGATGTGAAGTGATGTACTCATGGAAGTGACGCACGCAGTTTCCGGCTCTGTccatcaagcagacagactgacatgACTGAGTCCAGAACTCTGATTTATCTTTGCATGTGTTTTGCAAGTGCTGAAATCGATGGGCTGACCTGGCCCTGCGCACGGTTTGCAATCTCAGCTGTTCTGTATAACCCCCGCCCACCTCCCCAGCATCTCCCATGGGAGGGAGGGTTGGCACCGATGCTGGGACCTGCCCTTACCTCCCTGTCCTCTCACCCTCTCCCCTCCTTTGCAAGACACAAAATAGCATCCTTTTGGGCATGGCTTGCTGAGTATGCCAAACTATTTAACCCTGTCACTACCAATTATGAGCATATGCTGGAATGTCTTCAAAGTGACAGGAGATAGTatgtattttaaaatgacaaagtttaaaaaagaaaaagagaaatgatATGCTTTTATTGTACTAGTTTTCTATCACTCAAACATGTTGTTGTTCATAGTTCCAAACATCATTATGATGGACATCTGCCATAATGATCAACTATAGCTACTGGATATTTTTGTGGTCCTGTGGATTTCTGCATGGGTCTTCCTTGCAGGAATCCACACGAGATCCTTCCGAGAACTTTGgttgtcttaaaaaaaatacgCAGCAGCAGCGACAGcgacgacaacaacaaatgctGACAGAATGTTTCTGAAGTGACccttgggcggtagttgttgggCAGAAAATGGCACAGGTGGAAAAGAGTTTTTTTCTGTGAAGAGATGAGTTGCATCGGAgattttctatatttttgtatGCGTCGTCTTGCTTTGATCTCTTTGCCTATATGGCGTGccagtgtatgtgtttttttgcacGAAGCTAATGTGGCTGTAGATACAAtacaaatgtgaaaaaagtttttattttattttattattgtaaaagaGGATACTGTGATATGGTTTGTTTTGGCATCTGTCATGATCCTCAAAAAGAGCCTGTTGTTCTCTTTTCAAAAATGTCTAactgctcttctttctttcctctaaTACTGACTCCTGCAAAGCTTTGCCTTTTATTCTATACTTTCCCTTCTTATTTATGATATTTGCAAAATGGCATGTTTATGTGCGCATGCAGAAACTTCCATCTCCATGGTGATATGAGGAGCTCTGTTGAGGTTCTCCCAGAGGGACTGGCATTCACACAACTCAGGAAATCCCATTGGACCAGAGCATCAATGCATCCTACCCGCACGCACAACGCTACTTCTCTCTGATCCtcagtgtgtgtgcttgcgtgtgtgcatttgtgtgtgtttgtgtagaaaAAGCCTGGTGTGCGTAGTTATTTTCTACAAATAATTAAAGCACATTCAGTCCCCACATCCTTCTTTAATGTTGTTTGACTGTTTAGAAAAGCCTCAACGTGCGAGTCTGTATGTTTGACGTtttgtgcaaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggcgctgtATTGTATGATGTCAGTAAGCTCCTTAAGCTTGCACTGTATATCCATTCCAAAACCCCTCCAATGTAGCGATTCCCTTTAAAAACAGTGTTTGGTTTAGCTGAGCTCTCATTGGAGGTTGGATTTTTACTGATgctagagataaaaaaaaaaaagcatacagtAGATACATCTGGAAATTGTTTTGAAAATACAGACTGGATGACATTGCTAACTTAACTAAAAACTACATAAAAAGGAGGAGTCACAGTCAGGATAGTTACATAACAACTCAGGGGGAACCATTGAAGCTGTGCCTTTCATTCCTCACCTTTGACCTCCCAAGTtgtaccatcatcatcatcatcatcatcatcatcatcaacatcatcttCCCTGCTCTCACTCCAGCCATAGCTTGGTTTCCTTTCTCTTctcccttttttaaattaagtgcAGAGTAAAACCCTTCTCAAATCTGATCAACAGAGGCACCAAATATCCTGTTGCACCGACTGTGTGTATTCACATATACAGTGGGCCGGTTTACGTCATTGTCCTTTTGGTTGACATTAAAAGCCGGCCGATACTGGCAAGGCGAGGTTGTGCTTTTGTCCTGGCGCGGTGACGAGAGCGTGCTATTGTTCTCCGTCCTCCCCATCCTCTATTTATCAGCTTGCTCTGTCCACCACAGTGCATtcgctctgtctgtctttctgagTGTCCTCCACCCTCTCCccgagtagtgtgtgtgagcagtgtgtgtgtgtgtgtgtgtgtgtgagatggtatgtgtgtgtgcaactgtgtgtgtgagagagagaagacggGCACCTTGGTGTGATGCGTTTTTCATTCACCCAGCTATCTTGTTGTCTCTCTCACATCGACATgagtgtgtttttaaatgtctgagGACCATGACCACATTCCTGCATCCAGTCTTGACCTTTACCCTAACCCCATCCTAAACCTAATCTGAACCCTAAATCCAAGTCCTAATCCCTTCGTCAAAGTGGACCTTTGGCGGATTTCTTCATCTTTCTATCCTTGTGAGAACATTTTGTCCTGATAAGAATAGAAATATTAGAGTACCcgctgacatacacacacagacagcctgATGAATGTCTCCCCTCTCCATCCTTCTGTCACTGTCCTGTCATTTCCCTTCCCCCTTTGTCTCAGTCCTTTCCTCTTTGCCTCCACCCTTCCCTCCTCTTGTTCTTTCCCTCCCACCTTCCATCTATCCCCACAGGGGGCTCATTACGTAACCAAGAGGACATCTGAGTGCTACCTTTGCCGACAGGCAATTAGCCTGTGATTATAAAACCGCCTGACGAACAGGAGATGCGTATCgctcttctgtctgtctttttatttCACCCTTGAGTCTTTTTCCCCTTCACTCCATCTGCACCCTCCGTTCCCTttctctccacctcctcctcaccACCACATCTTTTGAGGTTAGCTGTCCCAGAAAAACTCCTAGCGGTTTGTGGAAAGCAATGGGTGATCAAGGGAAGTGTTCCTCGCTCTCTGTTCGGAAGCGATTCATATTTCATAGCGCAATAACAGAAGAGCACCCAGCTGTCCTTAATTGAGACAGATGTCTTTAGGGTGACACAtgtttctttctgtgtgtgagtgtgtgtgtgtgtctctgggcaGTGTAGTTTGTTGCTTCAGGCAAGCACTGACATTGGATACTTATCAGAGAGAAGTGCTCCAGAATatctctctgtgagtgtgtgtgtgatagtggTAGGAGAACCCAGTGCTATAAAAAGACATCAAAACAAGCATCTGTCGGACAGTGTAAAGGCAGGAGGGCGTATAAATATTCAGTTCAGCCCCTGTCACCCTATAGCCTACTTACCATCTAAGAACAAAGCTGAAGGGCCTGGGGACCGCTCTCACCACACCACCGGGCCCCATCGGTGAATATTAGGACAAAACCTGTGAACACAACTAGGACTGTGAAAACTGCTGTAGGACCTGAGTTTAGATAAtcttcacagagagagagatggtctGTGTTTAACCCACATTAGCATCCACCGTCTTAATTAAAACGTCCCGCAATCCTCGGGGGTGTTTgggtgcacacaaacacacacacgcacacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatagacatgcaTAATGAAATGGCTTATGAGAGTTCAGAGAGCAAAGCCATACAACTCACCcagcagagacaaagacacTATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24345 lncRNA downstream 278687 17844434 ~ 17849019 (-) True G17782
TU24342 lncRNA downstream 325773 17801486 ~ 17801933 (-) False LOC120552194
TU24297 lncRNA downstream 371274 17756168 ~ 17756432 (-) True G17745
TU24290 lncRNA downstream 434438 17692996 ~ 17693268 (-) True G17739
TU24265 lncRNA downstream 654760 17472679 ~ 17472946 (-) True G17716
TU24506 lncRNA upstream 231784 18383159 ~ 18383539 (-) True G17917
TU24537 lncRNA upstream 441600 18592975 ~ 18593673 (-) True G17936
TU24573 lncRNA upstream 597823 18749198 ~ 18749401 (-) True G17964
TU24596 lncRNA upstream 1003587 19154962 ~ 19155251 (-) True G17986
TU24614 lncRNA upstream 1079544 19230919 ~ 19234457 (-) True G18002
XM_039822496.1 mRNA downstream 2815 18119297 ~ 18124891 (-) True LOC120573061
XM_039790011.1 mRNA downstream 237045 17799999 ~ 17890661 (-) True LOC120552194
XM_039821995.1 mRNA upstream 5740 18157115 ~ 18170945 (-) False alp3
XM_039821984.1 mRNA upstream 5740 18157115 ~ 18170945 (-) True alp3
XM_039780175.1 mRNA upstream 27638 18179013 ~ 18222893 (-) True LOC120545639
XM_039780163.1 mRNA upstream 73137 18224512 ~ 18236516 (-) True psmd2
XM_039780219.1 mRNA upstream 136912 18288287 ~ 18298760 (-) True dhrs12la
TU24264 other downstream 648862 17473736 ~ 17478844 (-) False xaf1
TU24093 other downstream 1196712 16848161 ~ 16930994 (-) True G17597
XR_005637173.1 other downstream 2067298 16046008 ~ 16060408 (-) False sdhdb
XR_005637172.1 other downstream 2067298 16049872 ~ 16060408 (-) False sdhdb
TU23589 other downstream 2413443 15702609 ~ 15714263 (-) True G17287
TU24394 other upstream 54207 18205582 ~ 18222854 (-) False LOC120545639
XR_005637451.1 other upstream 1651338 19802713 ~ 19810130 (-) False si:ch211-11n16.2
TU25100 other upstream 1985967 20137342 ~ 20141512 (-) False LOC120547993
TU25187 other upstream 2942807 21094182 ~ 21097201 (-) True si:ch1073-340i21.1
TU25281 other upstream 3095464 21246839 ~ 21261923 (-) False slc6a4a

Expression Profile