RNA id: TU24537



Basic Information


Item Value
RNA id TU24537
length 699
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G17936
representative True

Chromosome Information


Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 18592975 ~ 18593673 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TATGTATACAGCTCCTATATTTAAGTAGTTACTCATGCCACACATCTTTAGAAAGCTAAAACTCTTGTGATTTCACTGATACAATCTATTCCAAGACACGATAACAACAGCAGGTACAAGCATCCCCTCTGTCTGAGTAACAAACAACTACAAAATTGAGGTAACCTTTCAATAGAGCCCTGAATGATGACTGTAATGTCAAATGTTCATGGGTAGCAGTCTTTTTAGTCTAGGTATGTGACCATCATTACCAAGGGTCCTTTTTAGAGTCACTAAAATGTCCGTTTTCGTGAACGCCTAGACATATACCCCTACAAAAACGGGTGTAGAATATTCATTTTATGAGATATTGATATGAAATTTCAACTGGGACTGTGTAAGACTTCATGCTATAGCCCCATTGTGTTTTCAGACTAATAGGTCCCAGCAAAAGTCATCTACAGGCATTTTgctataaaaaataatgcagacggacataaaaaaaatattttccagtATATTCAAACTTCTATTACTCAAAGCCAATAGCACTTACATTAATTCTAACTGTTGGGAAAGAAGCCTCAGAGTGTTACCTTTCAAAAGAAACCATAAACATGCATGTAGAACAAATGGTTCAAGAACAGCTTCCAATTTACTATGGGTATGCCTTGGATAGGCGTTTTTGGCTAATTTTACAGGAGTGTTAAGGGGTTAAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU24506 lncRNA downstream 209436 18383159 ~ 18383539 (-) True G17917
TU24397 lncRNA downstream 460959 18127466 ~ 18132016 (-) False zgc:165508
TU24345 lncRNA downstream 743956 17844434 ~ 17849019 (-) True G17782
TU24342 lncRNA downstream 791042 17801486 ~ 17801933 (-) False LOC120552194
TU24297 lncRNA downstream 836543 17756168 ~ 17756432 (-) True G17745
TU24573 lncRNA upstream 155525 18749198 ~ 18749401 (-) True G17964
TU24596 lncRNA upstream 561289 19154962 ~ 19155251 (-) True G17986
TU24614 lncRNA upstream 637246 19230919 ~ 19234457 (-) True G18002
TU24780 lncRNA upstream 789730 19383403 ~ 19405361 (-) True G18127
TU24813 lncRNA upstream 862540 19456213 ~ 19542671 (-) True G18155
XM_039826127.1 mRNA downstream 178834 18398802 ~ 18414141 (-) False sgpp2
XM_039826119.1 mRNA downstream 179341 18398802 ~ 18413634 (-) True sgpp2
XM_039826138.1 mRNA downstream 184614 18398801 ~ 18408361 (-) False sgpp2
XM_039788733.1 mRNA downstream 222518 18340612 ~ 18370457 (-) True acsl3a
XM_039818496.1 mRNA downstream 255460 18335196 ~ 18337515 (-) True kcne4
XM_039787348.1 mRNA upstream 182500 18776173 ~ 18797083 (-) False pxylp1
XM_039787358.1 mRNA upstream 182500 18776173 ~ 18797083 (-) False pxylp1
XM_039787373.1 mRNA upstream 182500 18776173 ~ 18795215 (-) True pxylp1
XM_039787383.1 mRNA upstream 182500 18776173 ~ 18793490 (-) False pxylp1
XM_039787365.1 mRNA upstream 182500 18776173 ~ 18791186 (-) False pxylp1
TU24394 other downstream 370121 18205582 ~ 18222854 (-) False LOC120545639
TU24398 other downstream 441007 18132087 ~ 18151968 (-) False zgc:165508
TU24264 other downstream 1114131 17473736 ~ 17478844 (-) False xaf1
TU24093 other downstream 1661981 16848161 ~ 16930994 (-) True G17597
XR_005637172.1 other downstream 2532567 16049872 ~ 16060408 (-) False sdhdb
XR_005637451.1 other upstream 1209040 19802713 ~ 19810130 (-) False si:ch211-11n16.2
TU25100 other upstream 1543669 20137342 ~ 20141512 (-) False LOC120547993
TU25187 other upstream 2500509 21094182 ~ 21097201 (-) True si:ch1073-340i21.1
TU25281 other upstream 2653166 21246839 ~ 21261923 (-) False slc6a4a
TU25499 other upstream 3070422 21664095 ~ 21671479 (-) False gdpd5b

Expression Profile