RNA id: TU24614


Basic Information

Item Value
RNA id TU24614
length 3397
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G18002
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 19230919 ~ 19234457 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTTTATTTGTGTTCTGTTTCTGAAAATGCACATACAACTTCTTTCCTATCCAGGCTGGGATAATTTGGCTAACATTTGGCTATCTGTGGGGTTAGTTCAGGGTGTGGGAAACTTCTTTGTAGCCATGGCTTTGGACAGATATTTTGAGAAGAGTAACAACCAGTAAAATCATTAGGCCTATAGCCTTTTTcctaacaaaaatacatttaatcgTATGTTGTGTGACTATTCCTATGTATAATCCGCTAAATCAGTATTCATTTAGGTTAAAAATAGTTTTATTATGTAAATAATACAAACTAAAGAAATCAATCAATTGCAGGatactgtaaaagaaaaagaaaaaaacagctatatgtatttttgtctgtagaatactgtgaaagtatgaAAAAACAGTTCATAATGTACTTTGCATTAACAGTACAAAACTGTTAATTTTAGTGACAGTCAATGTTCATTTTACAGTAATGACAACCCTGCTGCCAGTTTTCAAAtgcaaattcacaaaaaaacagtGATAGTTGCTTTAACTTCTGGAAAAACAGGGGGAACACCAGATTATACAGTTCGTTAGAGATTAATTGTATATCAAGATTTCTATTTCTACCACACAGCATCATTATTTCATTAATTCCATGCCACCTTTCAACACAGACCTGATTtattgatatgatatgatatgatatgatatgacaATAGGCTCATGCTAAGGCTTGGTGGCTAAACCATACCGTAACTTTATGAGGTTACACCAGGTCAGCTACCACCACTAATAGAAAAGTAATTATCTGGGGAAAAACGGCTGCTATTTCATTAGAACATGACATCAATAAATGTTACTAAAGGTAACATTATACAAATTCAATAGATTATCTCTATgtgaacaaatacattttaatctgCAATGGTGGTTAACAATGAGGACAACAATTACCATGATCCCACCACACAACTTCACAAGTCatcaaaagtctgtgtttacATCAATAGTATCGACTGAGAGTCCCCGTTGTGGAAGataattacatattgtacgtttaagtgAATGGAAAACATGAGCATGGATTAAAATGGCTTTTTCTCATGCAAATTTTAGGAGGATTTTAGGTTGAACATGAAACTTAAACTAGTTATATTTTGACATTGTTTGCAGTGCATCATCAGCGCCTTACTTATTACATAACTTTGTACAAATATCCAAGACATAGTTTTCGAATAAGAAAAAACTTTCAGTGCAAAGGTCAGTTTTAAAATCTGAATGCCTAACCTTGAAAAATTAAGATTTGATGTGACTGTCCGGAATGAATTGTGTTGATTTTTGTTCCCGTACATAAATCCATACCTACATAAGTACATATTGTACATACACAGGctacataaaaacacaataaaaaaacaacagtggcATTAAGTCAATTTATTACAGGTCTTCACAATTACATTATAAATAGGCAGAAACATGCAAGACATGACAGACAGTTTTTGCAGATAAGGTTTGACTTTTTAGGCCTTCTTAAATACTTGGTGGCAGACTTTGTCCAGCACAGTAATTTCCTGAAAGAGAACACAGACCTTTAGACTGCAGTCCAACATGATGCAACAaatgtctctcttagttacatAATCGGGCAGAGCTTACATCAATATATTTTAGATAGCGATTCATTATCTCGTTTATTGTTATTGCGATAGTCTGGTCTAATCGAGCGTTGGGAAATATTTAATCAAGCAAGTAAAGgggtaaatgtttttttcttttcttcatgtGGCCGACTTGAGACAATTTTGATCACACTTCTGATTTCCTGGCAAATATGGCACAGCATTTACAGCTCTCCAATGATTTAGCCAATGTGTCACACTTTCTCTCACCAGGTGTAGCAGGTCTCCCTCGATCCAGTGTGTCCAGCCTCGATTTGCTTTCTCCCCCTTCTGAACACACACCAGCTTGTCCCCATCCCAGGTAACCAGTGTCTGAGTTTTCGGTTGTCCAGGCCCTTTGTGAACTCTTCAAACTCCTCTCCCACGGTGAAATTGACCTCATAGTTTCTGAAGGTGCTCAGGGTCTTTGTTTCAAACTTGTCTCCATTCTGGACGATCACCTTTGTCTGATGCAGGTGGGCAGCTATCTTTCTGGTAGCAAAGTCAATGTCTGCAAGAATGAACAAATGAGATTAAAGTGAGTCAGTGGTAGCAGTATAAATCCATCATTTTGGTGtgtagttggacttctttaCAGACTAAATCCTTATGTACACAGACACTTCAAAGCACAcatccacagacacacatgacACCCCAGGCCACTTATTATGATTCCTCTCCTGCTGGTCCTTTTGACAGTCTCATTTACCTTTTAAAAATGACCTTGCTTTGAGTCAAATGAGTTCCTCCACCCTGTTCAGCATTGGGTCCTGAGAGCCACCCACCCCCGACCGTTTAGATATTCATATCCCATTTGCCTTAACGTAAAAATTCAATTTCTTCCCATCGCTCTTACAGATGAGGTCCCTATATTTACCatctaaataatatttttgacCCATTTCCATAAGGATGTCATTTTCCTATCCGCTCGATGGAAATGAGGTGGAGGCATTCAGGATTTCCCGGATTTTGTGTCAGCAGAGTGTATCGAGGTTGTTTTATGAATTGCAGATAGAGTCGTGAATAATGAAAGTGTTTCTGGGCCTGATCAATGACGCGCTAAAAGGAGGAGAGACGAGCCatgggctctctctctctttctctctctctctctctttattttaaTGACGAGCTGGCCCGCTGCCTGATCCAGGGTCGGAATCTGTCTTCCTTTTCTGCGGATCAGGAGGATGAAAATGCAGAAAGGAAGTGAATTAATATTTATTTGGCGTGGTAACAGACGGCAACCGCTCACAGAGTCGGGGTTAACTTGGCCTGACAGCAGCTCAATGAGGAAATGAAGCAGTGCCACAGCAttcctcttttttcctctctctctctcgctccctcacactgctgctctctcactctttctgtCACACTCCTTCCAAATGTTCTGCTCAGGCCTCCCTCCCTATTGGCTGCATCTTTAAAAAGCAGCCTTCTAATTGACTCCTGATTTTAATGAAGGTAACACGCTACAGTCTCCTGTTCAATGCCATTATGCAGGCTGTAAGAGTCGGCAACTTACCGATGGCCTTCATGGTGTCCTCAAAGTTCTCATTGCTCACCATCTCCCAACGTCCATTGTAGTCTGCAGGCATTTTTGAATTTGTTTGTGAGTGGAGGTAGTAGTTTTGCCCCTTATGCTTGTCACACTGAGAGAGGCAGTTTAAGCCCAGCCctttatatactgtgtgtgtgtgtctgtgtgtgtgtgtctgtgtgtgtgtgtctgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24596 lncRNA downstream 75668 19154962 ~ 19155251 (-) True G17986
TU24573 lncRNA downstream 481518 18749198 ~ 18749401 (-) True G17964
TU24537 lncRNA downstream 637246 18592975 ~ 18593673 (-) True G17936
TU24506 lncRNA downstream 847380 18383159 ~ 18383539 (-) True G17917
TU24397 lncRNA downstream 1098903 18127466 ~ 18132016 (-) False zgc:165508
TU24780 lncRNA upstream 148946 19383403 ~ 19405361 (-) True G18127
TU24813 lncRNA upstream 221756 19456213 ~ 19542671 (-) True G18155
XR_005641638.1 lncRNA upstream 303918 19538375 ~ 19541130 (-) True LOC120573122
TU24852 lncRNA upstream 390946 19625403 ~ 19628640 (-) True G18179
TU24860 lncRNA upstream 414759 19649216 ~ 19649652 (-) True G18184
XM_039790667.1 mRNA downstream 39129 19190494 ~ 19191790 (-) True LOC120552531
XM_039790658.1 mRNA downstream 61793 19168047 ~ 19169126 (-) True LOC120552522
XM_039790680.1 mRNA downstream 64642 19165388 ~ 19166277 (-) True LOC120552541
XM_039783743.1 mRNA downstream 89226 18892806 ~ 19141693 (-) True LOC120547915
XM_039787373.1 mRNA downstream 435704 18776173 ~ 18795215 (-) True pxylp1
XM_039782243.1 mRNA upstream 17879 19252336 ~ 19257822 (-) True mrps22
XM_039792615.1 mRNA upstream 196902 19431359 ~ 19434295 (-) True her13
XM_039782929.1 mRNA upstream 203783 19438240 ~ 19440140 (-) True her8.2
XM_039782931.1 mRNA upstream 203783 19438240 ~ 19439910 (-) False her8.2
XM_039785114.1 mRNA upstream 232206 19466663 ~ 19467908 (-) True LOC120548698
TU24394 other downstream 1008065 18205582 ~ 18222854 (-) False LOC120545639
TU24398 other downstream 1078951 18132087 ~ 18151968 (-) False zgc:165508
TU24264 other downstream 1752075 17473736 ~ 17478844 (-) False xaf1
TU24093 other downstream 2299925 16848161 ~ 16930994 (-) True G17597
XR_005637172.1 other downstream 3170511 16049872 ~ 16060408 (-) False sdhdb
XR_005637451.1 other upstream 568256 19802713 ~ 19810130 (-) False si:ch211-11n16.2
TU25100 other upstream 902885 20137342 ~ 20141512 (-) False LOC120547993
TU25187 other upstream 1859725 21094182 ~ 21097201 (-) True si:ch1073-340i21.1
TU25281 other upstream 2012382 21246839 ~ 21261923 (-) False slc6a4a
TU25499 other upstream 2429638 21664095 ~ 21671479 (-) False gdpd5b

Expression Profile