RNA id: TU25100


Basic Information

Item Value
RNA id TU25100
length 1517
RNA type TUCP
GC content 0.43
exon number 5
gene id LOC120547993
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 20137072 ~ 20141538 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCTACTTCTTTTAATCTGTTAGTCTTATTGAACAGGCAGCGTAGTGTTTGTTAATATCTTGTAGTGAATACATTACTACAGTATTGTAATACATTACAATACTAACCTGATCTATAGAGTAAAACGCtcaagaaacaacaacaaacaaaaaacagagttTGTCTTAAGAAAATGAACAGCATGGGTGTCCGGGCCACGCTCGCCGTCCTCCTCCTGTTCATAGCTACTGTGAAGGCTGCTGAAGGACAAGTAACATTCTGGAGAGCAAATTTCACAATGACCTGTCCTGGTGAAGGGAATTGGTTCAAGAAAGAATCTGTCTTTAATGGGAGAGAGTACACACAAGTTTATGATGGCAATTCCAAAGGCTTATACCGCTGTGAATACGTTACTGTTGAAGGAAGTCAATTAAAGAAGACATATTATTTCTACGTGAAGGGGAAggCGTGTGCAAACTGCTTTGAGCTGGACTCGTGGGTGGTTGGGCTGGCCATTGTTCTGGACGTGTTGGGGACAGCATTTGTGATGATGGTCATTTACAGCTCCTGCTCGTCCAGCAGGCCCCCACCAGGGTCCACCTGTCCCACACCCTGACTATGCGcCACTGAATCCTCGCACTCGCGCCCATGATGCTTATGATGTCGTCAACAGGATGGGATAAAGACAAGTCATCTGTCTGCTCTGGGTCACTGGTTAAAAGGCTGCTCATGCGAAGGCGACATTCATAAAATACATACACGAACATCAGTCATGCTCCCAGTAGCATGCATACACTGGCTTTTGCTCTCTTGGATTTAGAGGGTCGCTTGacccaaatggcaaaaaaaatatattacatagCCAGGCAATGTAGTTCAGGTTTAAGTTGTCCAGGTATGCTGCCACCACCGTGGTACAACAGAGCTGAATGGCATTTAATTTGGGATCCTCGCAGTATTTAcaaattttaaaaattaaaaatacattaaaaaactaCTTAGTGACTACTTTCTTACTGTCTTCCAAAGAAATAGTCCACATGAAAACTGTTGTCAGTGTATATGGTGGATTATTCTGAGAAACAGGTATGTTGGTTCTGTGTGTTGCTGTACATGAGTATGTCCCAACCTCAGGGTACTTCTGcttaatatacataatatacagaTAATGTTCTTTTGATATTGTCAACTGGTGTCGGCCTTAAATGATATGATGAAGCATTGAGATCATAGTTAAAAGTGCTGTTATACTGGACTGCATTATATTCAGAGGTGTTTCTAATATCCTTCCCTTCTCATGTATGTAAATAGAGAGATTCATTAACTAGAATTTAACCTAGGACCTCACTAATAAACATAATTGACTTAACACATTTTCAACGTCCCAAACATTTAATATTATCAGCGTCGTTAAGATAGAATTTATGGCAGAGCTGCTGGATTTCATTAGATTGTACAGGTGTACCCAAATAAAGTGATCACTGAGTCTATGCAGTATATGTTTTTGTAGTGTACTGACTCTGTAATATACAGCGTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25089 lncRNA downstream 17736 20116285 ~ 20119606 (-) True G18337
TU25072 lncRNA downstream 83208 20053220 ~ 20054134 (-) True G18329
TU24895 lncRNA downstream 281032 19851904 ~ 19856310 (-) True G18216
XR_005637280.1 lncRNA downstream 381349 19754887 ~ 19755993 (-) True LOC120548779
TU24875 lncRNA downstream 420057 19701228 ~ 19717285 (-) False fbxo46
TU25122 lncRNA upstream 43299 20184811 ~ 20258055 (-) True G18366
TU25123 lncRNA upstream 51368 20192880 ~ 20205688 (-) True G18367
TU25139 lncRNA upstream 565009 20706521 ~ 20706785 (-) True G18381
TU25140 lncRNA upstream 632123 20773635 ~ 20773922 (-) True G18382
TU25143 lncRNA upstream 746294 20887806 ~ 20888029 (-) True G18385
XM_039825636.1 mRNA downstream 59199 20059933 ~ 20078143 (-) True sidt2
XM_039825628.1 mRNA downstream 59200 20059933 ~ 20078142 (-) False sidt2
XM_039787132.1 mRNA downstream 106554 20028341 ~ 20030788 (-) True LOC120550021
XM_039787131.1 mRNA downstream 109545 20023847 ~ 20027797 (-) True LOC120550005
XM_039826050.1 mRNA downstream 113987 20011130 ~ 20023355 (-) True bace1
XM_039824481.1 mRNA upstream 84319 20225831 ~ 20948979 (-) False LOC120574226
XM_039824474.1 mRNA upstream 84319 20225831 ~ 20703728 (-) False LOC120574226
XM_039824468.1 mRNA upstream 84319 20225831 ~ 20438130 (-) True LOC120574226
XM_039826335.1 mRNA upstream 822328 20963840 ~ 21080775 (-) True igsf11
XM_039826337.1 mRNA upstream 822328 20963840 ~ 21080774 (-) False igsf11
XR_005637451.1 other downstream 327212 19802713 ~ 19810130 (-) False si:ch211-11n16.2
TU24394 other downstream 1914488 18205582 ~ 18222854 (-) False LOC120545639
TU24398 other downstream 1985374 18132087 ~ 18151968 (-) False zgc:165508
TU24264 other downstream 2658498 17473736 ~ 17478844 (-) False xaf1
TU24093 other downstream 3206348 16848161 ~ 16930994 (-) True G17597
TU25187 other upstream 952670 21094182 ~ 21097201 (-) True si:ch1073-340i21.1
TU25281 other upstream 1105327 21246839 ~ 21261923 (-) False slc6a4a
TU25499 other upstream 1522583 21664095 ~ 21671479 (-) False gdpd5b
TU25608 other upstream 1860392 22001904 ~ 22007171 (-) False LOC120551419
TU25812 other upstream 2997701 23139213 ~ 23148515 (-) True G18885

Expression Profile