RNA id: XM_039818712.1



Basic Information


Item Value
RNA id XM_039818712.1
length 626
RNA type mRNA
GC content 0.43
exon number 4
gene id si:ch1073-340i21.1
representative False

Chromosome Information


Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 21094177 ~ 21097201 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GTGTAGCTACGTCGCATGGTTTAGGTGCGGTTAATCTGTTTCCGGTGTGAGAAAAGGATAAAACGCAGCCGGTCCCCTCCTTCTTTAGTCACCTGTTTGGGAAATTTTACGAACAGAGTCAACAAAATGTCTTTCGACTTGTCTTCAGCTTTAGGTCAGGAAGATGAGGTGAAGAAGGAGGCTGCTCAGAAGGATGAGTTTAATTTGCCCTGGCAGAAGAAGAAGGACAAGGACAAGGAAGGTGGCAAGTCTAACAAAGAGGACAAGTCTGACAAAGAGGACAAGTCTGACAAAAAGCACAAGTCTGACAAAGAGGACAAGTCTGACAAAAAGCATAAGTCTGAAAAATCCAAGGACAAAGACAGCAAAGACCACAAGATGAAGcacaagaagaaaaaggaaaagaaggagGGCAAGAAATCAGGCTCTTCATCCTCCAGCAGCAGTGATGAGgaaTGATTCTTCCTCGATCTCTTATGATCTTGTCTGTTGACAAAATGAGTGTGTGGTTGAATGTACAGTAGTACCAACTTTTCTCCCTGTCCTTTTATTGGTGTCGCCGAAACATGCTGGTCTTGTGTAAAGAAATCTGCTGATTCAATAAAGTAAATCTTCGGTCAAAAAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_005642012.1 lncRNA downstream 7302 21085988 ~ 21086875 (-) False LOC120575525
TU25179 lncRNA downstream 7349 21085093 ~ 21086828 (-) True LOC120575525
TU25180 lncRNA downstream 7349 21085093 ~ 21086828 (-) False LOC120575525
TU25149 lncRNA downstream 156928 20936993 ~ 20937249 (-) True G18391
TU25143 lncRNA downstream 206148 20887806 ~ 20888029 (-) True G18385
TU25204 lncRNA upstream 16379 21113372 ~ 21115994 (-) True G18429
TU25298 lncRNA upstream 313915 21410908 ~ 21411199 (-) True G18492
TU25431 lncRNA upstream 430462 21527455 ~ 21583403 (-) True G18591
TU25432 lncRNA upstream 433004 21529997 ~ 21532748 (-) True LOC120572042
XR_005641345.1 lncRNA upstream 433291 21530284 ~ 21532755 (-) False LOC120572042
XM_039826335.1 mRNA downstream 13402 20963840 ~ 21080775 (-) True igsf11
XM_039826337.1 mRNA downstream 13403 20963840 ~ 21080774 (-) False igsf11
XM_039826326.1 mRNA downstream 35940 20963840 ~ 21058237 (-) False igsf11
XM_039824481.1 mRNA downstream 145198 20225831 ~ 20948979 (-) False LOC120574226
XM_039824474.1 mRNA downstream 390449 20225831 ~ 20703728 (-) False LOC120574226
XM_039823819.1 mRNA upstream 947 21097940 ~ 21108764 (-) False LOC120573880
XM_039823811.1 mRNA upstream 947 21097940 ~ 21108764 (-) False LOC120573880
XM_039823804.1 mRNA upstream 947 21097940 ~ 21108764 (-) False LOC120573880
XM_039823787.1 mRNA upstream 947 21097940 ~ 21108764 (-) False LOC120573880
XM_039823796.1 mRNA upstream 947 21097940 ~ 21108764 (-) False LOC120573880
TU25100 other downstream 952665 20137342 ~ 20141512 (-) False LOC120547993
XR_005637451.1 other downstream 1284047 19802713 ~ 19810130 (-) False si:ch211-11n16.2
TU24394 other downstream 2871323 18205582 ~ 18222854 (-) False LOC120545639
TU24398 other downstream 2942209 18132087 ~ 18151968 (-) False zgc:165508
TU24264 other downstream 3615333 17473736 ~ 17478844 (-) False xaf1
TU25281 other upstream 149846 21246839 ~ 21261923 (-) False slc6a4a
TU25499 other upstream 567102 21664095 ~ 21671479 (-) False gdpd5b
TU25608 other upstream 904911 22001904 ~ 22007171 (-) False LOC120551419
TU25812 other upstream 2042220 23139213 ~ 23148515 (-) True G18885
TU25813 other upstream 2042407 23139400 ~ 23148515 (-) False G18885

Expression Profile