RNA id: TU25281


Basic Information

Item Value
RNA id TU25281
length 1538
RNA type TUCP
GC content 0.51
exon number 5
gene id slc6a4a
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 21237188 ~ 21261923 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCAGAATACGGCCTGCTGTAAGCCCAGGCATGTGTGATTTGTGTGATTGGGTTTAGACTGCGTTGATAGGCGACGTCTTGGACACTAGATGACCAGACGCTCCATGGACAACGCAAGCTGTCATGCTAAAAATATCAAGttTGCCCCATCACTGAGTGTCTTAGAGGACGAGCAGTTTGAGGAGAAGATCCACACTTTTCTGCTGGCCACATCCTGTTCAAACACATCACTCTGCTCGTATATCCTCCGCTGTCTGTCCTCACAGCCTGCTTTTATTCCTTCTTGCTCAACAGACTCTTACACATTTCAGTCTTctcctacatacacacacccacatacactcACCTCCCCTCACCcgttctcatttttttttattttttttttttttaagctctgCTCTCCTGCTCTCCTGTTCCCCTTCTTCTTTACCTGTCCCTTGCTTTCCTAACCCCTCTGTTCCCCTAATGGGCACCATATCAGACAGCAGTGCCACATTCCCTTCATTGTCACTGAGAACCTCCCTCCACCCCTAACCGCCTCGCCAACGCCAACATCAACACGATCCAATGGAGACAAATGATATGATGCTGACGAGCATGTTGACAATGGATAAAAGAGAGaatgagggagagagggagaaaggaagagaggaggtgGGGGGAGAAGCGGAGGGAACACAGCAGGAACATAGTAGGCCGATGCTGGCTGATGGTCTCGCAGAGAGAGGACCCAAGAGCCTGATCTCCGGTTCTGGACAGCAGGTGTCCAATGGCTTCACCACATCCACTCCTCAAAGCCCCAGGGAGGGACCGGGGAGCGCAGCTTTTTCTGGAGGAACATCCTCTGTACCTGGAGGAGGCACCGGGTCCTCAGTGCCGCTTGGAGGCCTCAGGACTCTGGTGGTCCAACAAACCAGCTTGGAGAAGCCCAGAGAAACCTGGAGCAAGAAGATGGACTTCTTGCTCTCTGTGATCGGCTATGCGGTGGACCTGGGAAATGTCTGGCGCTTCCCTTACATCTGCTACCAAAATGGAGGAGGTGCCTTTTTGCTGCCCTACCTGTTGATGGCGGTGTTTGGAGGTGTCCCTCTCTTCTACATGGAGCTGGCTCTTGGCCAATTCCACCGCAGCGGCTGCATCTCCATCTGGAAACACATCTGCCCCATCTTCAAAGGGATCGGCTTTGCCATTTGCATTATATCCCTCTACATATCCTTCTACTACAACACCATCATGGCCTGGGCCTTGTACTATCTACTGTCATCGTTCCGACCCACCCTGCCCTGGACCACCTGCGCCAACAGCTGGAACACAGTCAACTGTAAACATTACATGTCCACCGATCACAATGTGTCGTGGTCCAACTCCTCCACCTCCCCCGCCGAGGAGTTCTATATTCGCCAGGTTCTGCAGGTCCACCTCTCCCCAGGTCTGCACCAGCTGGGCTCTGTCAGCTGGCAGCTGGCCCTCTGCCTGCTCTTCATCTTCACCATCGTCTACTTCAGCATCTGGAAAGGAGTCAAGACGTCTGGAAAGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25204 lncRNA downstream 130845 21113372 ~ 21115994 (-) True G18429
XR_005642012.1 lncRNA downstream 159964 21085988 ~ 21086875 (-) False LOC120575525
TU25179 lncRNA downstream 160011 21085093 ~ 21086828 (-) True LOC120575525
TU25180 lncRNA downstream 160011 21085093 ~ 21086828 (-) False LOC120575525
TU25149 lncRNA downstream 309590 20936993 ~ 20937249 (-) True G18391
TU25298 lncRNA upstream 148985 21410908 ~ 21411199 (-) True G18492
TU25431 lncRNA upstream 265532 21527455 ~ 21583403 (-) True G18591
TU25432 lncRNA upstream 268074 21529997 ~ 21532748 (-) True LOC120572042
XR_005641345.1 lncRNA upstream 268361 21530284 ~ 21532755 (-) False LOC120572042
TU25448 lncRNA upstream 349214 21611137 ~ 21612250 (-) False LOC120572205
XM_039823874.1 mRNA downstream 19432 21195388 ~ 21227407 (-) False ssh2a
XM_039823883.1 mRNA downstream 32773 21195388 ~ 21214066 (-) False ssh2a
XM_039823868.1 mRNA downstream 32773 21195388 ~ 21214066 (-) True ssh2a
XM_039823899.1 mRNA downstream 33168 21195388 ~ 21213671 (-) False ssh2a
XM_039823891.1 mRNA downstream 39194 21195388 ~ 21207645 (-) False ssh2a
XM_039787407.1 mRNA upstream 5781 21267704 ~ 21290294 (-) True blmh
XM_039780915.1 mRNA upstream 33426 21295349 ~ 21405528 (-) False rap1gap2a
XM_039780963.1 mRNA upstream 33426 21295349 ~ 21405527 (-) False rap1gap2a
XM_039780924.1 mRNA upstream 33426 21295349 ~ 21405526 (-) False rap1gap2a
XM_039780948.1 mRNA upstream 33426 21295349 ~ 21393518 (-) False rap1gap2a
TU25187 other downstream 149638 21094182 ~ 21097201 (-) True si:ch1073-340i21.1
TU25100 other downstream 1105327 20137342 ~ 20141512 (-) False LOC120547993
XR_005637451.1 other downstream 1436709 19802713 ~ 19810130 (-) False si:ch211-11n16.2
TU24394 other downstream 3023985 18205582 ~ 18222854 (-) False LOC120545639
TU24398 other downstream 3094871 18132087 ~ 18151968 (-) False zgc:165508
TU25499 other upstream 402172 21664095 ~ 21671479 (-) False gdpd5b
TU25608 other upstream 739981 22001904 ~ 22007171 (-) False LOC120551419
TU25812 other upstream 1877290 23139213 ~ 23148515 (-) True G18885
TU25813 other upstream 1877477 23139400 ~ 23148515 (-) False G18885
TU25890 other upstream 1984680 23246603 ~ 23252420 (-) True G18948

Expression Profile