RNA id: XM_039821413.1


Basic Information

Item Value
RNA id XM_039821413.1
length 1500
RNA type mRNA
GC content 0.43
exon number 11
gene id LOC120572205
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 21610814 ~ 21615246 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAAGTTGCTGACAATGACTGCTGACAGGTGGATTGTCCTTTTAGCCCTGTGCTTTATCTGTGTGTCTTCAAATGAGAACTCTTGTGAGCAGCATTCCAGTGTTTGTGAGACGCACACACTCAGCGCTCCACTTGGCTCCTCTGTGCTCCTGCCATGCAACTTTTCAACAATTCAAGGCGACTGGGTGTCCTGGGCCCACAATCTTAAGGGGATTCTGGTCCATATCAAATCTGAAGGCCTTATTAAGTTCCGGGACCACAGGCATGGTCGGGTGAGAGTCTTTCCTAACCAGGGCTCAGAGGGGAACTACTCCATCTTCATCGATGGACTTAACAACTCTGACCTCGGGTGTTATCGCTGTAAGCAGAAATATAAATGTCTTCAAGTGAAGTTGGTTGCTGAAAGAGATGCTCTGAGTGAAGAGATGAGGCTATTGATTTTCATCTGTGTTGGCGTGGCTGCTTTGATCCTGCTGAGCGTCGGTGGCTACTGCTGCACCAAGTGCAAATTGTGCTGCAATAACAGAAAGCAGGACAATCCTGAAGGTACAGGTACTGAGGGTGTCAGTGCTCCACCCGCAGAAACAGGCAGAGCGCCAGTAGAGCAACAGCACAGAGTGTTTCCTTTTCCTTCAGGAGCAGGCAATGATCATCTTGTTTATGaaaatgatGACCAAGGCCCATCCAACCAGCAGGATGACCCCATCAGAAATTATTGCAGTCCAGTATCAGAAGTTCTGCCTGATCCGCAAGGGACTCAACCCATTCAAAGTGCCAGTGGGATTTATCCAAACTTGAACCAGTTTGAGAGGATGGAAAGTCAGAAAAAGAAACTGAGAGTTCATCAAGAACTCTTCAGCAGATTACGGCAAACAAGTCTCAGTCGGCATTATTACGCTAACCAAAGTGAAATCAGCCAGCAACAAGCCATGGCAACTCAGGCAAAGAATAATCGCAAAGGTCTGGGGAAGAAGAAAGCCAAAGAAAATGCTGAATACAAAAACCCGATTTACAACAGGAGCACAGACCAGCTCAACCGCCTATAGAGAGAGTAAAGGAGAGCTTAAACAGCTTTTGAGATATTTTCAGTATCAACATCCTTTCCAATGACATATTATACCtgatacatatattatatttgtTTGCTGTATAATTGCACTGCATTTCCTGTACATGTAGTAGACAATGAGTGATTGCTGTTTGGTAAAGACTATCAAATAAAGATCTTCACAGACAAATCGAGACGTAGTCCATGTATGTGTTAAATTAGACAAACCTGTGTATGCAAGCTGTACTGAATGCATGTGAGAAGCAAaacagtaggcctacttttatGACCATATAAATTGCTTTATACTTTCAGTTTGACTTGCAGACAAAATGAAAGCCTTTTGTGGGTTTCCATAAACCACACTACATTCACAACTACAGACAGTTTAGAGTCTCAGGTTCACCTGCatgtcttattattattattatttttggggcattttcaggcctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25431 lncRNA downstream 27411 21527455 ~ 21583403 (-) True G18591
XR_005641345.1 lncRNA downstream 78059 21530284 ~ 21532755 (-) False LOC120572042
TU25432 lncRNA downstream 78066 21529997 ~ 21532748 (-) True LOC120572042
TU25298 lncRNA downstream 199615 21410908 ~ 21411199 (-) True G18492
TU25204 lncRNA downstream 494820 21113372 ~ 21115994 (-) True G18429
TU25483 lncRNA upstream 17738 21632980 ~ 21695722 (-) True G18626
TU25489 lncRNA upstream 36461 21651703 ~ 21652866 (-) True G18631
TU25545 lncRNA upstream 204747 21819989 ~ 21878764 (-) True G18669
TU25654 lncRNA upstream 532797 22148039 ~ 22148297 (-) True G18758
TU25667 lncRNA upstream 573021 22188263 ~ 22188687 (-) True G18770
XM_039821926.1 mRNA downstream 176 21608044 ~ 21610638 (-) True LOC120572601
XM_039821932.1 mRNA downstream 179 21608044 ~ 21610635 (-) False LOC120572601
XM_039821940.1 mRNA downstream 180 21608044 ~ 21610634 (-) False LOC120572601
XM_039792047.1 mRNA downstream 3074 21600529 ~ 21607740 (-) True dhx40
XM_039783219.1 mRNA downstream 10815 21580379 ~ 21599999 (-) True akt2
XM_039788843.1 mRNA upstream 48834 21664076 ~ 21710363 (-) True gdpd5b
XM_039787962.1 mRNA upstream 105747 21720989 ~ 21732143 (-) False gucy2f
XM_039787954.1 mRNA upstream 105747 21720989 ~ 21732143 (-) True gucy2f
XM_039825479.1 mRNA upstream 139151 21754393 ~ 21758179 (-) True mmp13b
XM_039790075.1 mRNA upstream 172298 21787540 ~ 21794580 (-) True siae
TU25281 other downstream 348891 21246839 ~ 21261923 (-) False slc6a4a
TU25187 other downstream 513613 21094182 ~ 21097201 (-) True si:ch1073-340i21.1
TU25100 other downstream 1469302 20137342 ~ 20141512 (-) False LOC120547993
XR_005637451.1 other downstream 1800684 19802713 ~ 19810130 (-) False si:ch211-11n16.2
TU24394 other downstream 3387960 18205582 ~ 18222854 (-) False LOC120545639
TU25499 other upstream 48853 21664095 ~ 21671479 (-) False gdpd5b
TU25608 other upstream 386662 22001904 ~ 22007171 (-) False LOC120551419
TU25812 other upstream 1523971 23139213 ~ 23148515 (-) True G18885
TU25813 other upstream 1524158 23139400 ~ 23148515 (-) False G18885
TU25890 other upstream 1631361 23246603 ~ 23252420 (-) True G18948

Expression Profile