RNA id: TU25483


Basic Information

Item Value
RNA id TU25483
length 527
lncRNA type sense_over
GC content 0.42
exon number 4
gene id G18626
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 21632980 ~ 21695722 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtttcctTGGCACCAGTACTAGTTCAAAACATAGCTGCTACTACCAGTGTGTTGCGCAGTTTCAGAAGATGAGATGAGACTAAATAATTAAACATTTGTAGAtttcattgaaaataaaataaatcaaagacAGGAAAATCACATTAAAATCTTATAATCTAACAAATCATCTTCCATCAGATTTAGATTTAAGTAATTACTTTTTCATTTACTATTTTCATTAATCAGAAAGTGAAAGTGAACGCTGAGGGATGACTCAGGCTCAGCAAAGGTCGCTTTGGCAGCATTTTGTGGAATAGTCTTCGGCACAGAATTCCTCACAAGTTCGAGAAAGTTCGTCACCGTTGGTCTTGGTCTGGCAGTACTGAGCTGATGGCGGGCAATCTGTCTCCGTCTTACAGCGGTCGTCACCTTCACAGGTGTAGCATCTGAGTGTGAGCACTTGAGTGCTGCACAGCAGGAGCAGCAAAGTGAGAAGCAGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25448 lncRNA downstream 20730 21611137 ~ 21612250 (-) False LOC120572205
TU25431 lncRNA downstream 49577 21527455 ~ 21583403 (-) True G18591
XR_005641345.1 lncRNA downstream 100225 21530284 ~ 21532755 (-) False LOC120572042
TU25432 lncRNA downstream 100232 21529997 ~ 21532748 (-) True LOC120572042
TU25298 lncRNA downstream 221781 21410908 ~ 21411199 (-) True G18492
TU25545 lncRNA upstream 124267 21819989 ~ 21878764 (-) True G18669
TU25654 lncRNA upstream 452317 22148039 ~ 22148297 (-) True G18758
TU25667 lncRNA upstream 492541 22188263 ~ 22188687 (-) True G18770
TU25698 lncRNA upstream 587281 22283003 ~ 22286209 (-) True G18795
TU25706 lncRNA upstream 668549 22364271 ~ 22364495 (-) True G18803
XM_039821452.1 mRNA downstream 17734 21610814 ~ 21615246 (-) False LOC120572205
XM_039821468.1 mRNA downstream 17734 21610814 ~ 21615246 (-) False LOC120572205
XM_039821461.1 mRNA downstream 17734 21610814 ~ 21615246 (-) False LOC120572205
XM_039821446.1 mRNA downstream 17734 21610814 ~ 21615246 (-) False LOC120572205
XM_039821426.1 mRNA downstream 17734 21610814 ~ 21615246 (-) False LOC120572205
XM_039787962.1 mRNA upstream 25267 21720989 ~ 21732143 (-) False gucy2f
XM_039787954.1 mRNA upstream 25267 21720989 ~ 21732143 (-) True gucy2f
XM_039825479.1 mRNA upstream 58671 21754393 ~ 21758179 (-) True mmp13b
XM_039790075.1 mRNA upstream 91818 21787540 ~ 21794580 (-) True siae
XM_039790066.1 mRNA upstream 92224 21787946 ~ 21794944 (-) False siae
TU25281 other downstream 371057 21246839 ~ 21261923 (-) False slc6a4a
TU25187 other downstream 535779 21094182 ~ 21097201 (-) True si:ch1073-340i21.1
TU25100 other downstream 1491468 20137342 ~ 20141512 (-) False LOC120547993
XR_005637451.1 other downstream 1822850 19802713 ~ 19810130 (-) False si:ch211-11n16.2
TU24394 other downstream 3410126 18205582 ~ 18222854 (-) False LOC120545639
TU25608 other upstream 306182 22001904 ~ 22007171 (-) False LOC120551419
TU25812 other upstream 1443491 23139213 ~ 23148515 (-) True G18885
TU25813 other upstream 1443678 23139400 ~ 23148515 (-) False G18885
TU25890 other upstream 1550881 23246603 ~ 23252420 (-) True G18948
XR_005641870.1 other upstream 2033766 23729488 ~ 23758826 (-) False atm

Expression Profile