RNA id: TU25489



Basic Information


Item Value
RNA id TU25489
length 952
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G18631
representative True

Chromosome Information


Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 21651703 ~ 21652866 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


tctcagtgtgttctgagtgacagtgtgtatcatctcagtgaggattgttcatagtgtttggctgcactgagcctgttttgagacgcgtgtgaagagttgtgcaggagatgtgaactgtttgGTTTAGTTAACCAAAGgtaatgcagactgtagttGGAGTTTTTacacatgtggcttcagttgtgcccagtgtcgtttagcaatcgaaaaaaaaactgtaactgctTCCTTGTTATGGTTGTAACTGTCTGATGACCCTCTCGCTTGTGACCAGACTAAAACAAGTGAGTGACGCTGTCCTCACCTCGAGATTCAGTCGCTCCAGTAACTCCAGCAACGTTTTAGGCCGAGGTCTTTTGCACAGCTTCTGTTGTCTGATCTTGGGAGCTTCCTCTTGTTCCTCTTTCTCCACCAAAACATCTACGTATATGAACTTGAAGTTGCCCACTTTGTTGTTAAGCATGCCTGTCCAGATGCCCATCGGAGGCTTactgatgatgttgatgatgtcaccgaccttgaaaaaaaatgatagtGAACGTCATGAAAATCTTTATCTGTTAAGATAATAATTGACATCCGGGAATCGTCACCGCACAACATATCACTGCACAAACAGTGTTGTGTCTCACCTTGAGTTTGAGGGAGTCTGTGTCATACGGGCTGGGAACGAAGTCTGTGTGGACGCGAGCTCTGCCACAGAACTGTCCCTGATAGGAGCCGTCCTCCTCCAGCCTCAGACTGTCTCTCTGACCAGAACCGTTGGACTCGCTGGTCACACCACCTGAACTAGAGGAGCTCTGGCCGCTGTAAAGACTCTCTAAGGAGTTGCTTGTCTTTGCAGAGTTTTTCTCAGCTGGTGGgccactctctgtctctgcctctgGGTCTTTATCTGTGTCATCACCCTGCGAAGGGAAAGAAAAGATACaccgttttttttaattgagag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU25448 lncRNA downstream 39453 21611137 ~ 21612250 (-) False LOC120572205
TU25431 lncRNA downstream 68300 21527455 ~ 21583403 (-) True G18591
XR_005641345.1 lncRNA downstream 118948 21530284 ~ 21532755 (-) False LOC120572042
TU25432 lncRNA downstream 118955 21529997 ~ 21532748 (-) True LOC120572042
TU25298 lncRNA downstream 240504 21410908 ~ 21411199 (-) True G18492
TU25545 lncRNA upstream 167123 21819989 ~ 21878764 (-) True G18669
TU25654 lncRNA upstream 495173 22148039 ~ 22148297 (-) True G18758
TU25667 lncRNA upstream 535397 22188263 ~ 22188687 (-) True G18770
TU25698 lncRNA upstream 630137 22283003 ~ 22286209 (-) True G18795
TU25706 lncRNA upstream 711405 22364271 ~ 22364495 (-) True G18803
XM_039821426.1 mRNA downstream 36457 21610814 ~ 21615246 (-) False LOC120572205
XM_039788843.1 mRNA upstream 11210 21664076 ~ 21710363 (-) True gdpd5b
XM_039787962.1 mRNA upstream 68123 21720989 ~ 21732143 (-) False gucy2f
XM_039787954.1 mRNA upstream 68123 21720989 ~ 21732143 (-) True gucy2f
XM_039825479.1 mRNA upstream 101527 21754393 ~ 21758179 (-) True mmp13b
XM_039790075.1 mRNA upstream 134674 21787540 ~ 21794580 (-) True siae
TU25281 other downstream 389780 21246839 ~ 21261923 (-) False slc6a4a
TU25187 other downstream 554502 21094182 ~ 21097201 (-) True si:ch1073-340i21.1
TU25100 other downstream 1510191 20137342 ~ 20141512 (-) False LOC120547993
XR_005637451.1 other downstream 1841573 19802713 ~ 19810130 (-) False si:ch211-11n16.2
TU24394 other downstream 3428849 18205582 ~ 18222854 (-) False LOC120545639
TU25499 other upstream 11229 21664095 ~ 21671479 (-) False gdpd5b
TU25608 other upstream 349038 22001904 ~ 22007171 (-) False LOC120551419
TU25812 other upstream 1486347 23139213 ~ 23148515 (-) True G18885
TU25813 other upstream 1486534 23139400 ~ 23148515 (-) False G18885
TU25890 other upstream 1593737 23246603 ~ 23252420 (-) True G18948

Expression Profile