RNA id: XM_039788843.1


Basic Information

Item Value
RNA id XM_039788843.1
length 3547
RNA type mRNA
GC content 0.48
exon number 17
gene id gdpd5b
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 21664076 ~ 21710363 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGTGACGCTTTCTCACTGTACACGGGGGCTGGAAATAAAAAAGACCGACACACACTCCTCCCACCATTCATTCAGTACGCTACATTGAGTTACCCTGTTGGTTTATGTATCGCTGCCTACACGGAGACGAGGAAGCACGCTTAATCTACAGATGGGACGAAAAAACACAGAGGACGGAGTAACTGAAAATAGCTAGACCGAAGCCACTGACACCGTCCGTACTCACCCTGCTCCTTTCTCCTTTGTTTTCGATGTAAAACTTCGTCTCTGTCAGCATTTACGTTACCGACCACCCACCTCTCACACGTTACCTTTGACAAGGGTTGTTCCCGTTTGACTCTCGGGGGAGGCATTTCActggagagaaaggaaaagaaaagcctCAACTTTACTGTGTGCCGCAAAGCTAACTCTGAAATCAAAGAAAAGTGGTAGCAGACTTCAGACAGGACACTTCGTAGTCAGTGGGATGTTAGAGCTCTGGAAGCAGGACTGACTGAAGGAGCATGGTGAAACACCAACCCCTCCAGGTCTATGAGCGCCAGCTGTGTTTGTCATGTATCACTGGGATCTACGGTTGCCGCTGGAAACGCTATCAACGTTCCCATGATGACACCACCAAGtggGAGCTGCTGTGgtccttcatcctcctctttacCTTCTGTCTGCTGCTGGTCTGGTTCTACTTCTGGTGGGAGGCACATAACGACTACAATGAGTTCAACTGGTTCCTCTACAACCGCTCTGGGGAGTGGAGTGATGGCACTGTTCCCATCCTGGCCACCACCGCTGCTGGCTTCACCTACATCGCATTTTTAATGGTTTTAGCACTTTGCCACATTGCACTTGGGCAACAGTTGAATTTACACTGGCTCCATAAGATAGGAGTGGCTGCTGCTCTGTTCACCACCATTGTCGGGGTGATATCTGTCAATCAAACATGGGGGCAAGAGTGGGATGTCATCCCCATCTCCCTGCAGGCCACAGGTCCGTTCCTGCACATAGGGGCTCTCGCTGCGGTCACAGCGTTGTCTTGGATTGTGGCTGGACAGGTCGCCCGCACAGAAAAAACAATGTTTCAGGTAGTGGTCGTGCTGCTTTATCTCAGTGTGTTACTGGGACTCTACGTGGTGCCCATGTACATCACCTCCCCCTGCATCATGGACCCCACCACCCTCAAACAACGCCCTGATGTCATTGGCCACCAGGGAGCCCCCATGCTTGCTCCAGAGAACACACTATGGTCCTTCCAGCGAGCTCTGCAGATGAATGTCACTGGGTTTGAGGCTGACGTGGCTATCAGCGTGGATGGAGTACCTTTTCTGATGCACGACCGCACCCTGCGGAGGACCACTGATGTGGAGAAGGTCTTCCCAGACAGACAAATGGAAGACGCCTCATTCTTCAACTGGACAGATCTGCAACAACTCAACGCAGGACAGTGGTTCCTCAAGGTAGTTGTTGGTTTTCACCGGAGCAGGGTCTGGTACAAGATGGCTTTCTATCATAACAGCACGGTGGTTTTCCGGCTGAGGAGACCTCCTCCAGAGCACCCCTGCTACCACAGCTGGGTCAATGATACGCTGCAGGCTGTGCAACAATCTGGGGTTCCTCAGGGTCTGGTGATGTGGACTCCAGATGAACACAGAGCTCAGGTAAGACAGCTGGCACCCGGTCTGATCCAGACCTCAGTGGAGAAACGGAGTCCTCAATTTCTCCATCAGTACGGCATCAGCCGGCTGCTGCTCAGATACAACCAGGCCAGCCCTCAGGAAATCAgAAACTTCTCCCAGAGCAACATCAACCTCACCCTTTACACCATCAATGAGCCCTGGCTGTACTCAGTGCTCTGGTGCAGTGGGGTGTCTTCAGTCTCCTCAGAGGCCTCGCATATCCTGAAAAAGGTGCCTTACCCCATCTGGCTCATGAGACCAGATGAATACTGCCTGATGTGGGTGTCTGTGGACCTCCTCTCCTTTGCTGTAGTCATAGGAATATTCATTTTCCAGAACTATCACATGATCAGGTATCGGATGAGCGGGATGCGCAGCTACAACCCTGAACAGATCATGCTGAGCGCCGCAGTCAGGAGGTCGAGCAGAGACCTCAACGTCATGAAGGAGAAACTTATCTTCTCTGAGGTGGGGAATGGAGTCGGCAGTGCTGAGGAGCTGTACGCGGACAATGGCTACGACTACTACACCAATCAGGGCATTAGCCAATGATCGGGACTGAGCCTGAGTGAATCTGCTGTAGCGAGATGGAGACGACAACGCTCTGTGTTCACATCATTCCTGTTCTAGTCTGTGTAATGtctgatctcctcctcctgtcctaGTGAATAACAGTGAATAACAGTTCCTACTGCTGTATCGGATGGAGAAAAACAACCACCCAGTTAATTTGTGTACATTCTGTAAATAGTTTTGTGTTTTGCTTTTCGGACATGCTGTTTATCACCCAGGACTGCACGCACTTTTTATTAATGGAATTTGCCAAATCTGTGGACTCGTCTCTCACACCCGAGAGGCCCCTCTGAGTTACCAAGGCCTGCTTCTTTTAAAGAGGTTTCCAGATTCTTTATTATTTTAAGCTAATTTTCCAAAGCAGTTCCTTGTTTTTAACCACTGTACATGATATTCTTCTCTCCTAGCAGGTGAATTTCCTTTATAAAGAGGCTTTTTACAAGGCTTTATTGCAGCAATAGACTAAACGCTACCGCTCATTATGCTCTTGCCTCCTGTCAGCACGCCATTGTGCGGTTGTTCTTAATAGTACTAacattaatatttatatttaaagagAGAAACGAAAAACATGAACACGCCGTTTACACAATCCTGCCTTTTCTTCCAAGTGAAATATTCACAAGGTGTATGTAAGATAATTATTTCGATAAATGCTGAATGCCCCCCCACACCTCCCTGCCCTACTTTTGACCAGTGTATGTAACCATGATGATCATGCTGACTGATATCTGTGAGCTGTGCTCCCAGAGCACCAGAAGAACAGGTGAAAACGGTTTGGGGATGAGGAGTTGTGCTGTCTGTTTATGGTTCATGTGAATGTGTTTGgacagttttcttttctttttttttaaagatgtgaacggtgtattgtgtgtattctGGCTgggtatattttttttaccccGTGTGCAGTGCTATGTTGAGTGTGTTATTGTACATAAAAGGTGAACCAGTGTGTGAGATGCTCCAGCCAACTAAGCATTACATTTGAACAACGTGACTGATGAGTAATAATTACAATAGCAATAGCCTGGTCAAGATGGAAGTCATTTGCCTTCCTACACAGCCTCTGAATTGCAGTTACCTCTGTGGTATTTAAGTGTTGACAGACAACATGCATCTAAATGTTGGTTGCTGGTGTAAAACTGACTGCTGTAAGGTAAATGAAGTAGGTgctaaatgtgaaaataaagcTCTAAGCTAATTGAAGGGACGCTACAGGTAACACAGGGTCAATAAACTGATtgccttttgtgttttctttttgtattaCTGTGCCTcagaaataaaaattaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25489 lncRNA downstream 11210 21651703 ~ 21652866 (-) True G18631
TU25448 lncRNA downstream 51826 21611137 ~ 21612250 (-) False LOC120572205
TU25431 lncRNA downstream 80673 21527455 ~ 21583403 (-) True G18591
XR_005641345.1 lncRNA downstream 131321 21530284 ~ 21532755 (-) False LOC120572042
TU25432 lncRNA downstream 131328 21529997 ~ 21532748 (-) True LOC120572042
TU25545 lncRNA upstream 109626 21819989 ~ 21878764 (-) True G18669
TU25654 lncRNA upstream 437676 22148039 ~ 22148297 (-) True G18758
TU25667 lncRNA upstream 477900 22188263 ~ 22188687 (-) True G18770
TU25698 lncRNA upstream 572640 22283003 ~ 22286209 (-) True G18795
TU25706 lncRNA upstream 653908 22364271 ~ 22364495 (-) True G18803
XM_039821452.1 mRNA downstream 48830 21610814 ~ 21615246 (-) False LOC120572205
XM_039821468.1 mRNA downstream 48830 21610814 ~ 21615246 (-) False LOC120572205
XM_039821461.1 mRNA downstream 48830 21610814 ~ 21615246 (-) False LOC120572205
XM_039821446.1 mRNA downstream 48830 21610814 ~ 21615246 (-) False LOC120572205
XM_039821426.1 mRNA downstream 48830 21610814 ~ 21615246 (-) False LOC120572205
XM_039787962.1 mRNA upstream 10626 21720989 ~ 21732143 (-) False gucy2f
XM_039787954.1 mRNA upstream 10626 21720989 ~ 21732143 (-) True gucy2f
XM_039825479.1 mRNA upstream 44030 21754393 ~ 21758179 (-) True mmp13b
XM_039790075.1 mRNA upstream 77177 21787540 ~ 21794580 (-) True siae
XM_039790066.1 mRNA upstream 77583 21787946 ~ 21794944 (-) False siae
TU25281 other downstream 402153 21246839 ~ 21261923 (-) False slc6a4a
TU25187 other downstream 566875 21094182 ~ 21097201 (-) True si:ch1073-340i21.1
TU25100 other downstream 1522564 20137342 ~ 20141512 (-) False LOC120547993
XR_005637451.1 other downstream 1853946 19802713 ~ 19810130 (-) False si:ch211-11n16.2
TU24394 other downstream 3441222 18205582 ~ 18222854 (-) False LOC120545639
TU25608 other upstream 291541 22001904 ~ 22007171 (-) False LOC120551419
TU25812 other upstream 1428850 23139213 ~ 23148515 (-) True G18885
TU25813 other upstream 1429037 23139400 ~ 23148515 (-) False G18885
TU25890 other upstream 1536240 23246603 ~ 23252420 (-) True G18948
XR_005641870.1 other upstream 2019125 23729488 ~ 23758826 (-) False atm

Expression Profile