RNA id: XM_039788856.1


Basic Information

Item Value
RNA id XM_039788856.1
length 2773
RNA type mRNA
GC content 0.46
exon number 20
gene id LOC120551419
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 21983302 ~ 22007175 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTACAGGAGTACAGTCGGGTGTTTAGTGTTTACTTTTGGACAACTAACGTTAGGCTATACTAACGCTAGCTTCCCCTGACATCAGATACTGGTCACACTAGCTAGTTTAACATTCATTTTTCAtagacatgtttagttttttgaattAGTAATCCCGGAAGTAACGATACGAATAATTTAGCGTTGTGTACTTATGGGGTAGCTCAACTTCACTGGCGTTATCATATCATTTTTGCGAAACTGGAATAACGTTAGCCTATGTTAGATGTGACATAACCGTATACATTGAGATAACGGGATTCTAGTCCACATCGGAAAGAAAAAGATAACGTTATGTACTTTAAGTCGCGTTTAAACAAGAAACGTTCATACTTAAGTTGTGTTGTTATTGCCAATGGAAAGCTTATCGATGGTCAGGCTTCGTCTGACCCTAAAGCAAAGATATTTTCTCCTGCTGTGTTTTGCCGTCGGAGCGATCATTGCCTATCAGTTTACAAGGAATCGCCTTGAAGTAGAAAGAATGAGCCGTGTGGAGGGTCTGAGGGCCAACTCGTCTCAGTTCACTCTGGAGAGAAAACCCTTCCACATCCTGGGGGGGTCCATCCATTACTTCCGTGTCCCCAGAGCCTACTGGGAGGACCGGCTGCTAAAGATGAAGGCCTGTGGCCTCAATACTCTCACAACGTATGTGCCGTGGAACCTGCATGAGCCTGAGCGAGGGGTGTTCAACTTTGAGGATCAGTTGGATTTAGAAGCCTACCTCCGCCTTGCAGCCAGCTTGGGCCTCTGGGTGATTCTACGTCCAGGGCCGTACATCTGTGCTGAGTGGGATTTAGGGGGACTACCCAGttggCTGCTACGGGATCAAAACATGAAACTAAGAACAACCTACCCAGGATTCACTGCTGCAGTCAACTCCTTCTTTAATCAACTCATGAAGAAAGTTGTTCCACATCAGTACTCCAAGGGTGGCCCAATTATAGCAGTTCAAGTGGAGAATGAATATGGCTCCTTTGCTAAAGATGAAGATTACATGCCTTTCATCAAGGAGGCATTATTGTCAAGGGgcatcacagagctgctgctgaCCTCAGACAACAGGGAAGGACTAAAGCGTGGCGGAGTGAAAGGAGCACTAGAAACCATCAATTTCCAGAAACTCAACCCGAATGACATCAAGTGTCTGGATGGAATACAACCTAACAAGCCTAAGCTGGTGATGGGGTTGAATAGTGTGAAACCATTGGCAGGACTGCGTATCATGTCACCCACTTACGGTGGTGGAAAGATTCAGatccttaaaggtgctgtagACATGATACCTGTGGTCACAGAGATCCTTAAACTGGACATGTCTATCAACCTCTACATGTTCCACGGAGGGACAAATTTTGGCTTCATGAGTGGAGCGTTTGCTGTTGGAATGCCAGCACCTAGACCTATGGTCACAAGCTACGATTACGATGCTCCATTATCCGAGGCTGGGGATTACACCACCAAGTACCATCTTCTGAGGAATTTATTCAGCCACTACCACGCCCAGCCTCTACCTGAACTGCCCTCTCATCAGGAAAGGAGAGCGTACCAGCCTATTGTCATCCACCAGCACCTGTCTCTGTGGGACAGTCTGCATTTCACTGACAAGCCATTGAAGTCAGAGAGGCCGATGAACATGGAGAATCTCCCTGTCAACAATAACAATGGTCAGTCTTATGGCTATACACTGTATGAGACCACCATGACCAGCAAAGGAACCCTCAACTCAAAGAACAACATCAGAGACCGAGCACTGGTTTTTGTGGACAAACATTTTGTTGGTGTTCTGGATTATGAGACGCAAGAACTTCCACTCCCTGATGGGAAgGGAAAAAGAACTCTAAGTTTACTGGTTGAGAACTGTGGAAGAGTGAATTATGGGAAAACCCTGGATGACCAGCGCAAAGGTCTTGTGGGAGATATCGAGTTAAACAAGCGCCCCCTCAGTGACTTCATTATTCGCAGTCTGGATATGAAGCCAGGCTTTGTAAACAGACTTGAGAGTTCAGGCCACTGGATGTCTATGCGTCAGCGGCCCTCCTTCCCAGGGTTTTTCCAGGCCAGACTCTATGTGAACAGTTTTCCTAAAGACACTTTCATCAAGCTCCCTGGCTGGAGCAAAGGTGTAGTGTTTATCAACGGCAAGAATCTGGGTCGCTACTGGTCCATCGGTCCTCAGCAAACCCTCTACGTCCCAGGTCCCTGGCTTCACAAGGGGGACAACCAGGTCATAGTGTTTGAAGAGCAGGAAACAGATGGGAAGATTCAGTTTGCCAGCAGTCCGGACTATGGCATGACAGTTGATGTCCAGTGAGGACACGAGGCGAGAGGGGAGCGTGGATGAAGAGAGGAGGATGATGGGAGAGTAGCTGGGGAGAACACAATTGAGGCGATTGCCCCAAGCTTTGTATACTCAGGCACTGACACCCCCAGAAGTGGCACATGTCAGTCAGTGAACATGTTATTTTGTGTCCTATCAGAAGACACCAACACAGCAGTGTTACAGACCACTTTTTCATTTAGTGACTGTATTTATGAAATTCTTTAAATTCTTTTTGTTCAATTTAGTAACATTATCATTAACCTGCATTAAAACTTCATAATTGGAGACCATTGGACTTTGTTTGATTATAATAAAATGTTGTAAAATATCTTCCTCCCACagtattcatttttaaattgcaGGCTGTGTTAAAAGAACTGTAAATAAAGGCGGGTTCAACCTCTGTGTCATTAA

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0004565 beta-galactosidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25545 lncRNA downstream 104538 21819989 ~ 21878764 (-) True G18669
TU25483 lncRNA downstream 287580 21632980 ~ 21695722 (-) True G18626
TU25489 lncRNA downstream 330436 21651703 ~ 21652866 (-) True G18631
TU25448 lncRNA downstream 371052 21611137 ~ 21612250 (-) False LOC120572205
TU25431 lncRNA downstream 399899 21527455 ~ 21583403 (-) True G18591
TU25654 lncRNA upstream 140864 22148039 ~ 22148297 (-) True G18758
TU25667 lncRNA upstream 181088 22188263 ~ 22188687 (-) True G18770
TU25698 lncRNA upstream 275828 22283003 ~ 22286209 (-) True G18795
TU25706 lncRNA upstream 357096 22364271 ~ 22364495 (-) True G18803
TU25713 lncRNA upstream 425378 22432553 ~ 22432962 (-) True G18810
XM_039790066.1 mRNA downstream 188358 21787946 ~ 21794944 (-) False siae
XM_039790075.1 mRNA downstream 188722 21787540 ~ 21794580 (-) True siae
XM_039825479.1 mRNA downstream 225123 21754393 ~ 21758179 (-) True mmp13b
XM_039787962.1 mRNA downstream 251159 21720989 ~ 21732143 (-) False gucy2f
XM_039787954.1 mRNA downstream 251159 21720989 ~ 21732143 (-) True gucy2f
XM_039777878.1 mRNA upstream 37006 22044181 ~ 22053600 (-) True srpra
XM_039790215.1 mRNA upstream 144162 22151337 ~ 22179661 (-) True kcnj5
XM_039790305.1 mRNA upstream 192959 22200134 ~ 22233779 (-) False fli1
XM_039790251.1 mRNA upstream 192962 22200137 ~ 22233776 (-) True fli1
XM_039790268.1 mRNA upstream 192962 22200137 ~ 22233775 (-) False fli1
TU25499 other downstream 311823 21664095 ~ 21671479 (-) False gdpd5b
TU25281 other downstream 721379 21246839 ~ 21261923 (-) False slc6a4a
TU25187 other downstream 886101 21094182 ~ 21097201 (-) True si:ch1073-340i21.1
TU25100 other downstream 1841790 20137342 ~ 20141512 (-) False LOC120547993
XR_005637451.1 other downstream 2173172 19802713 ~ 19810130 (-) False si:ch211-11n16.2
TU25812 other upstream 1132038 23139213 ~ 23148515 (-) True G18885
TU25813 other upstream 1132225 23139400 ~ 23148515 (-) False G18885
TU25890 other upstream 1239428 23246603 ~ 23252420 (-) True G18948
XR_005641870.1 other upstream 1722313 23729488 ~ 23758826 (-) False atm
TU26143 other upstream 1816646 23823821 ~ 23827954 (-) True G19140

Expression Profile