RNA id: TU25667



Basic Information


Item Value
RNA id TU25667
length 425
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G18770
representative True

Chromosome Information


Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 22188263 ~ 22188687 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ccgcaggttccagttaatcttataatgggtatgtgtgttgagttatttaaacaaacaatcggggaaataaacacctcttgtccgcgagtctcattgatagagccgcggtgagatggagtccatcaatgagagctagctagcctcctcctaactctgacattcacaaaaatacattcaattgaaatccgaaatcggacaagtgttagctaagctttgtaagaccttgaggaacctgtaatattcatgccgtgacgaaattcaaactgtaaatatacttttagttatgcgaaagtgagcaagctgcgatatttccccattgtaatgaatgggacatatagcaagcagctgctcgtcctacaaagacgccttgcgttcataaaaatgccttaaaatcaaatcggacacaacggttagctttataagac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU25654 lncRNA downstream 39966 22148039 ~ 22148297 (-) True G18758
TU25545 lncRNA downstream 309499 21819989 ~ 21878764 (-) True G18669
TU25483 lncRNA downstream 492541 21632980 ~ 21695722 (-) True G18626
TU25489 lncRNA downstream 535397 21651703 ~ 21652866 (-) True G18631
TU25448 lncRNA downstream 576013 21611137 ~ 21612250 (-) False LOC120572205
TU25698 lncRNA upstream 94316 22283003 ~ 22286209 (-) True G18795
TU25706 lncRNA upstream 175584 22364271 ~ 22364495 (-) True G18803
TU25713 lncRNA upstream 243866 22432553 ~ 22432962 (-) True G18810
XR_005637251.1 lncRNA upstream 446890 22635577 ~ 22636410 (-) True LOC120548681
TU25750 lncRNA upstream 589049 22777736 ~ 22779777 (-) True G18837
XM_039790215.1 mRNA downstream 8602 22151337 ~ 22179661 (-) True kcnj5
XM_039777878.1 mRNA downstream 134663 22044181 ~ 22053600 (-) True srpra
XM_039788856.1 mRNA downstream 181088 21983302 ~ 22007175 (-) True LOC120551419
XM_039790066.1 mRNA downstream 393319 21787946 ~ 21794944 (-) False siae
XM_039790075.1 mRNA downstream 393683 21787540 ~ 21794580 (-) True siae
XM_039790305.1 mRNA upstream 11447 22200134 ~ 22233779 (-) False fli1
XM_039790251.1 mRNA upstream 11450 22200137 ~ 22233776 (-) True fli1
XM_039790268.1 mRNA upstream 11450 22200137 ~ 22233775 (-) False fli1
XM_039790287.1 mRNA upstream 11450 22200137 ~ 22227491 (-) False fli1
XM_039790240.1 mRNA upstream 11706 22200393 ~ 22233774 (-) False fli1
TU25608 other downstream 181092 22001904 ~ 22007171 (-) False LOC120551419
TU25499 other downstream 516784 21664095 ~ 21671479 (-) False gdpd5b
TU25281 other downstream 926340 21246839 ~ 21261923 (-) False slc6a4a
TU25187 other downstream 1091062 21094182 ~ 21097201 (-) True si:ch1073-340i21.1
TU25100 other downstream 2046751 20137342 ~ 20141512 (-) False LOC120547993
TU25812 other upstream 950526 23139213 ~ 23148515 (-) True G18885
TU25813 other upstream 950713 23139400 ~ 23148515 (-) False G18885
TU25890 other upstream 1057916 23246603 ~ 23252420 (-) True G18948
XR_005641870.1 other upstream 1540801 23729488 ~ 23758826 (-) False atm
TU26143 other upstream 1635134 23823821 ~ 23827954 (-) True G19140

Expression Profile