RNA id: TU25698


Basic Information

Item Value
RNA id TU25698
length 2918
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G18795
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 22283003 ~ 22286209 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAACATGTCAATAATAATTTGCATTTATGATTCAAAACagtaacaccacacacaagTATGAAATCTTTGTTCACATATATTTTATAACATTTTGAAGTACATTAAGTACATTTTAGAAATAGAAGCTACAGTTTATAAAACCTTTCCAGCAGAAATCATTGATGGGCCAGCATCAGCCTTTTTTCTCTAGCAGACAGGTctattttctatatatatatatatatatataaaaaagaataaaaaaacaaaaaagaatcgCTACATTATTTTGTCCTGCGCTACCTTTATAGTCCCATGAAAGCACCAGCTGTCTGCATCTCTCGtcttttataaaatataaattattgaaaaatattcaaatgtttgtgaactaaatacaataaaaatgatctcataacaaaaatacagagacactataaaatatacaaaaaacaacaacatccatAACAAAAAAGGTTTTCCTTCTGAATCCATTTTGAGATATGCATATGCCACAAACTACTGGTGTGTATACACTTGCCCAACTAAGGTTCATTAATACATATGACCTGCAGTAGATTGTAATGCGTGACATTTAACAATAGTACATTTCCCTGTCAAAATCATTTCCAAAACACTAAAATTTTAGGTAACGTAATGTTTTCTTTAAGCACATTAATCTTAAACTAACTGTACTTATATTATGACCTTGTGTGTGGGGAAAAGCAAacaattatgttttaaaaatctGTAAAGCTCTcctaaacaaaaaaatttaccTCAACAAAAACAGTGTTTTGAAACCTTGACATCAATATTCAGAGAAGAATGGAACTACAGTGCAGCTTATTACGAATCCATTTGTTGACGAACATGGGTGAGGGTTTGTGAGTCAGTGCTTGATGATGGGAGACAAGCTTATTACCAATTAAACATTATGAAATACAATCTGTACAAATAGACATCTCAAAAGCTATTTTCATCCATATGGGTAACATTCAGCCACTGTAAACAATAACATTGTGTTCTAAGATGATATTCCACTTTGGCATTTCCCATAAGGCCAGTGTAAAGCCACTGTTCCCACTGTTGGGAGAAAACTGCTGCTCAAAAGTAACCAGTGATTCTTAATGCACAAGTATGGGTGGAATCCTACATGAGTTACTCACAATGAACTGAAGGTTTTGCTCATAGATAAGTAACGCACAAACccaaaaatgaaatataaatgtTTGCCACTAGTCCTAAATGCCTCTTTTTGCACTGAGGTTTCAGCTGCATTCGTGCATCCAACAAACCACACAAGCAGTGGAAAATACACAACCCATGCAATGCAAACCTCCAAGCAGTGCCAACTTGCATCAATtctgtcagtcttcctctatcTGACCTTACAAGTGATCATCACCTGCAGTATTCCTTTCAGTCACCTTCATCTATCCCACACAACTTCCGATTCTCTCTAGTCCACATTTTTCTATTGCCTGTCCCTTTTTCCTACACTGTACCTTCACGCTACACTGCAGCCTCATGGCCAAAATGTACtgcataacaaaacataaaaaaaaaaaaaactggctttCTTAGGATTTTGAAAAATCACTTCCTCAGCTATTTCACTTGTGATTTTATTGTATAAACATACAGACAGAAGACTATTCAAACACTTCTAAAGCAACCGTAACATGGACAGTGAACCGACCAATTATGCATCTAATCTGCACATTAAACAACTCTTTTTAACAAGGACTCCTGAATTTCCTCACATAGATTGTCTACAGTTTGCTAATACTGGTGGTATATGCAAAAAATGCACGAGTTTCAGTCACAATATGCGTTTGTAACAAGGTGGCAAACGTACGTAAAGGTGAAAACGTCAGTTTCAAAAGCAACGGCTACTTTCAGTTGTTTGTCTATCAGACACTCTAGGTATGAGTAATGTCACAAACCCTACAAAGCACATGGCCAGTATCTATAGTGTTGTCTGATAACCAATCAGCACATTTCAGTTAAAGGCTCCTAGagaacagaacaaaaaaactTGGCATTGGATGCTTGGTTGTAATACCTTCATtgacaacacaacaaaaatatcTTTCCAATATATGCCTAGTAGGTTTACATTAGGTGTTCTCaacattaataatataatactggCACAAGCATACGCTCCTCAAACAACAAATCTGAAACGACACTTTTTTGGTCCAAGCTGAAAATTCTCTTTTTGCCAAAGAGAAACACTGAATAATTATGTAAATATGTCATTATACCTTCCTTAGTtcagtttttacattttggcaactgttttttttttctatgcagGAATGTTTCACCCATTCTAACTAAACCATGAAATTAATCCATTATTTTGCTCTCTTTCGGTTCTGTCAGTCCTTATGTCTTGGTCCTCTCGTCTCCCCCACTGTGCTACTTAGGCAGAACGGAACTTGAACTCTACCCGATAGCGATCTGCCTTGAGCTGCTAAATAATACCGGTACATAATCACACATacgcacgctcacacacacatgcgcgcacacacatctcAAATGCAACAGGGTATGAATACAGGCTTTTGGCTTGTGCCTTCTTTTTAAAACATGGTCTGAGAGACAGGAGCTTGAAGTTGACAAGGACCACAGTTagtcattaaaaacattttggtcCCTAAAAAACGGTTTTACCAACTCTATCAAAACAGTTGAGACCACTTGAGCCCCAGTCCACGTGTCTCCTCAACTTTTGTCTTCACTTCTCGCTTTGCCTTTGCTTTCACTCGTCCGTATCAGGCTGTACGTCCAACATTGCATGGAGCTCCTCAGGAGTGTACCCCAGCAGGCTTTTTAAGTCACAGACAAAGCGGTAGACATAGCGTTTCCCTGATGTCTTGTGGATGATATTCTTGTCATAATAGTAGCGTAGGCCACGGCTCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25667 lncRNA downstream 94316 22188263 ~ 22188687 (-) True G18770
TU25654 lncRNA downstream 134706 22148039 ~ 22148297 (-) True G18758
TU25545 lncRNA downstream 404239 21819989 ~ 21878764 (-) True G18669
TU25483 lncRNA downstream 587281 21632980 ~ 21695722 (-) True G18626
TU25489 lncRNA downstream 630137 21651703 ~ 21652866 (-) True G18631
TU25706 lncRNA upstream 78062 22364271 ~ 22364495 (-) True G18803
TU25713 lncRNA upstream 146344 22432553 ~ 22432962 (-) True G18810
XR_005637251.1 lncRNA upstream 349368 22635577 ~ 22636410 (-) True LOC120548681
TU25750 lncRNA upstream 491527 22777736 ~ 22779777 (-) True G18837
XR_005641431.1 lncRNA upstream 508217 22794426 ~ 22795639 (-) True LOC120572359
XM_039790305.1 mRNA downstream 49224 22200134 ~ 22233779 (-) False fli1
XM_039790251.1 mRNA downstream 49227 22200137 ~ 22233776 (-) True fli1
XM_039790268.1 mRNA downstream 49228 22200137 ~ 22233775 (-) False fli1
XM_039790240.1 mRNA downstream 49229 22200393 ~ 22233774 (-) False fli1
XM_039790259.1 mRNA downstream 49230 22200393 ~ 22233773 (-) False fli1
XM_039821718.1 mRNA upstream 61102 22347311 ~ 22352582 (-) True smtla
XM_039788880.1 mRNA upstream 502835 22789044 ~ 22799012 (-) True LOC120551448
XM_039821365.1 mRNA upstream 574742 22860951 ~ 22871590 (-) True barx2
XM_039790989.1 mRNA upstream 588856 22875065 ~ 22882453 (-) True rbm7
XM_039780872.1 mRNA upstream 873087 23159296 ~ 23162078 (-) True LOC120546095
TU25608 other downstream 275832 22001904 ~ 22007171 (-) False LOC120551419
TU25499 other downstream 611524 21664095 ~ 21671479 (-) False gdpd5b
TU25281 other downstream 1021080 21246839 ~ 21261923 (-) False slc6a4a
TU25187 other downstream 1185802 21094182 ~ 21097201 (-) True si:ch1073-340i21.1
TU25100 other downstream 2141491 20137342 ~ 20141512 (-) False LOC120547993
TU25812 other upstream 853004 23139213 ~ 23148515 (-) True G18885
TU25813 other upstream 853191 23139400 ~ 23148515 (-) False G18885
TU25890 other upstream 960394 23246603 ~ 23252420 (-) True G18948
XR_005641870.1 other upstream 1443279 23729488 ~ 23758826 (-) False atm
TU26143 other upstream 1537612 23823821 ~ 23827954 (-) True G19140

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU164741 True 2628 lncRNA 0.37 2 CI01000028 664690 ~ 726000 (-)
eurasian perch (Perca fluviatilis) TU164741 False 991 TUCP 0.44 6 NC_053123.1 6670477 ~ 6677030 (-)
mexican tetra (Astyanax mexicanus) TU216704 True 2727 lncRNA 0.37 2 NC_035914.1 21847617 ~ 21850541 (+)