RNA id: TCONS_00006731


Basic Information

Item Value
RNA id TCONS_00006731
length 2591
RNA type nonsense_mediated_decay
GC content 0.46
exon number 18
gene id XLOC_003446
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 24339362 ~ 24356093 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTCTTATGCAACAAGACGAGACGTGCACGCGCAGGGATTGTTTGCCGCCAGTTTGCGTGGATTCGAATCAATCGACCAGGGTTGCAACTGTAGCTGAAACGGACCGTAGATCCGGGATTTACCGCTCGTTTGTGGAGCCAAGACTGTGACGCTCTGTAGGCCGCAGTGTAACGTTTTAAGatcaacaacaacaacatggccGATGATTTGGACATTGAAGCAATGCTCGAGGCTCCATATAAAAAGACTTGCCTATATCTCACCTCTACTCCCATGAATTCCAGTGTGAACTGTCAAAAAAATGAAGGGCGAGATGTGTGACTGAGGTGGCATCGAGCTCTTTCAATCCACGAAGGCATATGGGGTGAAGATCACTGGAATGGCATCCACCACTGGAGCTCGTTTAGTGGCTGGCTGCTAGCGTTGCCACTTTGGGTCTTAGGCTCAGATAGCCTTGGATGACAACAAGTCCTTAAGTACCAATGGCCACGAGGAGCGGAGCAAGAAaaaaaagaggAGCAAAAGTCGCAGCCGGAGTCGGGACAGGAAGAGAAGCAAGAGTCGCGAGCGCAAAAAGAGTCATGACCGGAGGAGGAGCCGCAGCAGAGACCGGAAGCGCAGCCGCAGCAAGGAGAGACGTCGCAGCCGTTCTCGGAGCAGGGAGCGCGGCGGTCGCTACAGAGCTCCATTTTCTGGCCTGAAATTTAACGGTGGTCCCAGGGGGAAGACTGGCCCACCACCTGCCATCAAACTAAGTCGAAGAAGGTCTAGAAGCCGAAGTCCTTTCAAGAAAGATAGAAGCCCTGTAAGACAGCCCATTGACAATCTCACCCCTGAGGAAAGAGATGCTCGCACAGTGTTCTGTATGCAGCTGGCAGCCAGAATCCGGCCACGAGACCTAGAAGAATTCTTTTCTGCAGTTGGAAAAGTCTGTTTGTTTCACTTTGGACAACTTTGACCCGTTTCCCCACTAAGCTTGGATTCTAAttgattatgtttttcttttaaggTACGAGATGTGCGAATCATCTCTGACCGAAACTCCAGAAGATCCAAAGGAATTGCTTACATTGAGTTTGTGGATTCCACATCTGTACCCCTGGCAATTGGTCTATCTGGACAAAGGCTTCTTGGAGTACCAATCATTGTCCAGGCTTCACAGGCTGAGAAGAACAGAGCCGCTGCATTGGCCAATAACTTGCAGAAGGGCAGCGCAGGACCCATGAGGCTCTATGTTGGCTCATTGCATTTCAACATCACAGAAGACATGCTCCGAGGCATTTTTGAACCATTTGGAAGAATTGATAGTATCCAACTGATGATGGACAGTGAAACAGGACGATCTAAAGGATATGGTTTTATCACATTTTCTGATGCTGAATGTGCAAAGAAGGCACTGGAACAGCTTAATGGCTTTGAGTTGGCTGGTAGACCAATGAAAGTGGGACATGTGACGGAGCGCACAGATGCCTCCACCGCCAGCTCCTTCCTGGACAACGATGAGCTAGAAAGAACCGGTATTGATCTGGGGACTACAGGAAGACTTCAACTCATGGCCAGATTAGCTGAGGGAACTGGTTTGCAGATCCCGCCCGCTGCACAACAGGCCCTTCAGATGAGTGGCTCCATGGTTGCCATGGCTGCAGCTACTGCTGCTATGAACCCTGGATTGAGTTTTAACATCAATGTGCCAACAAACCAAGCCTTGAATTTACCATCACAACCCATCGCAACACACTGTTTCCAGCTGTCCAACATGTTCAATCCAAACTCAGAAAATGATCATGGTTGGGAAATCGAAATTCAGGATGATGTCATTGAAGAGTGCAACAAACACGGTGGAGTCATACACATATATGTGGACAAGAAATCTGCTGAAGGTAATGTCTATGTGAAGTGTCCCACCATTCCTGCTGCCATGGCTGCAGTCAGTGCGCTACATGGACGCTGGTTTGGAGGTAAAATGATCACAGCAGCTTATGTCCCGCTTCCTACATACCACAACCTTTTCCCAGAGTCAGTGCAGGCCACACAGCTTCTAATCCCCAGTCGTCGGTGATCAATCACCACTGTACAACTCCACTTTTTCAGCCTTGCTCTTTTTAACTTTTGGACAATAATAACAGTTCTGCAAGTTGTGGCACAGGTGTGGTAAGGTAAAGTTTCACTTGCATACTGTCCTTACAGGTCATGGACAAGTTctgtggttaaaaaaaatcctATGTACAGCCTACTTATTGAATTTTGCTTCTTGATCTTTTATTGTTGGTACATATTTGTTTTTCTCTTCCACATTTATTGTCTCTGTGAAAGATCTGATTGGTATGTTTATCACTCGAGGTAGTGTATAATAATACCAGAAACGCAGTATAAGTAAGTCTTGGATTCAAACTCTTCAATTTTGATCAAATGTCAACATATTCAACTTTTTGGCTCTATGAGCTGTGGGAACTAAATGGCTGACAAATATCTTTTGTTCATTTAGAGACCACGAGGTTTAGAAACATCTTGTTTTtctaatcaagattttgatttttgtAAAGTTCTTGATGAAAAGTTCATTTCAAATAAAGCAGAGATAACTGAAATA

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2852 Predicted to enable RNA binding activity. Predicted to act upstream of or within mRNA processing. Predicted to be located in nucleus. Orthologous to human RBM39 (RNA binding motif protein 39).

Ensembl:

ensembl_id ENSDART00000138314

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008610 lncRNA upstream 87746 24120291 ~ 24251616 (+) False XLOC_003442
TCONS_00008400 lncRNA upstream 161711 24176418 ~ 24177651 (+) True XLOC_003443
TCONS_00006722 lncRNA upstream 188145 24116083 ~ 24151217 (+) True XLOC_003441
TCONS_00008608 lncRNA upstream 255774 24063943 ~ 24083588 (+) False XLOC_003440
TCONS_00006773 lncRNA downstream 555056 24900479 ~ 24905875 (+) False XLOC_003459
TCONS_00008401 lncRNA downstream 714039 25059462 ~ 25060098 (+) True XLOC_003463
TCONS_00008612 lncRNA downstream 836434 25181857 ~ 25189277 (+) False XLOC_003466
TCONS_00008613 lncRNA downstream 836669 25182092 ~ 25228195 (+) False XLOC_003466
TCONS_00008614 lncRNA downstream 866233 25211656 ~ 25228195 (+) False XLOC_003466
TCONS_00006730 mRNA upstream 7310 24316110 ~ 24332052 (+) True XLOC_003445
TCONS_00006727 mRNA upstream 8044 24313931 ~ 24331318 (+) False XLOC_003445
TCONS_00006728 mRNA upstream 9170 24313994 ~ 24330192 (+) False XLOC_003445
TCONS_00006729 mRNA upstream 10711 24314148 ~ 24328651 (+) False XLOC_003445
TCONS_00006726 mRNA upstream 28717 24298432 ~ 24310645 (+) True XLOC_003442
TCONS_00006745 mRNA downstream 3002 24348425 ~ 24356093 (+) True XLOC_003446
TCONS_00006747 mRNA downstream 275319 24620742 ~ 24658494 (+) False XLOC_003448
TCONS_00006748 mRNA downstream 275395 24620818 ~ 24664031 (+) False XLOC_003448
TCONS_00006749 mRNA downstream 294320 24639743 ~ 24662785 (+) False XLOC_003448
TCONS_00006750 mRNA downstream 294320 24639743 ~ 24663227 (+) True XLOC_003448
TCONS_00006723 other upstream 160424 24178823 ~ 24178938 (+) True XLOC_003444
TCONS_00006700 other upstream 941977 23397270 ~ 23397385 (+) True XLOC_003428
TCONS_00006698 other upstream 1625231 22714015 ~ 22714131 (+) True XLOC_003425
TCONS_00006686 other upstream 2688724 21650522 ~ 21650638 (+) True XLOC_003418
TCONS_00006677 other upstream 3287018 21052228 ~ 21052344 (+) True XLOC_003409
TCONS_00006746 other downstream 235156 24580579 ~ 24581114 (+) True XLOC_003447
TCONS_00006769 other downstream 535886 24881309 ~ 24883345 (+) True XLOC_003457
TCONS_00006774 other downstream 556455 24901878 ~ 24903210 (+) True XLOC_003459
TCONS_00006779 other downstream 635496 24980919 ~ 24983498 (+) True XLOC_003460
TCONS_00006781 other downstream 649310 24994733 ~ 25025497 (+) False XLOC_003461

Expression Profile

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