RNA id: TU25824



Basic Information


Item Value
RNA id TU25824
length 564
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G18896
representative True

Chromosome Information


Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 23155941 ~ 23156504 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CACAGACTTTGGCCTGTTGTTGGTGTAAGCCCAGGAGGAGACCCCATCTGTGGGCTCAGTGGAACAAGATCTTCCTTTATGCGATTGACCCTCACTCGACTCATAGAAACCTAGGAAATAGaattagagaaagagagagggcaTGCCTATCTTATTTATTATAGCTCACTGTTCATTCCAGTTCTCTAAAAATATGCTGCTCGTGTCTCACTGCATTTCACAAATAGGCCACAAAACAAGATTACAAGCAACTGGAGCATGAACGAACAATAAGAGCAGAAATAACATTACAAACTCATTCCAAGCATATTTCAAAATGCAAAGAGAAAACACGAGTTTCGTTGTATAGCGCATATATTTAATGCAAAAGAATCCCCTCGGTGGCTTTATTGAAATTACAAAGTGCACATTTAGAAACATACATGTGACAGCTGTGATTACAGAAAAGGTTTAAAACTCGCCTGCGTATCCTTGAGCTCCATCATAGCAGCCATCGTCAGTGTCGATCCTCAGGTCTCCCACCTGCTGTTCCAGCGCCTGCATCAGGCCCCATGGGGAACTCTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU25810 lncRNA downstream 17682 23137650 ~ 23138259 (-) True G18883
TU25794 lncRNA downstream 35007 23044749 ~ 23120934 (-) True G18868
TU25755 lncRNA downstream 339961 22815781 ~ 22815980 (-) True G18841
XR_005641431.1 lncRNA downstream 360302 22794426 ~ 22795639 (-) True LOC120572359
TU25750 lncRNA downstream 376164 22777736 ~ 22779777 (-) True G18837
TU25836 lncRNA upstream 18960 23175464 ~ 23175714 (-) True G18905
TU25842 lncRNA upstream 22132 23178636 ~ 23180583 (-) True G18911
TU25856 lncRNA upstream 39164 23195668 ~ 23196344 (-) True G18923
XR_005636957.1 lncRNA upstream 60262 23216766 ~ 23234546 (-) True LOC120546850
TU25884 lncRNA upstream 77009 23233513 ~ 23236846 (-) True G18943
XM_039790989.1 mRNA downstream 273488 22875065 ~ 22882453 (-) True rbm7
XM_039821365.1 mRNA downstream 284351 22860951 ~ 22871590 (-) True barx2
XM_039788880.1 mRNA downstream 356929 22789044 ~ 22799012 (-) True LOC120551448
XM_039821718.1 mRNA downstream 803359 22347311 ~ 22352582 (-) True smtla
XM_039790297.1 mRNA downstream 928637 22200393 ~ 22227304 (-) False fli1
XM_039780872.1 mRNA upstream 2792 23159296 ~ 23162078 (-) True LOC120546095
XM_039780884.1 mRNA upstream 5698 23162202 ~ 23169207 (-) True lbhl
XM_039782027.1 mRNA upstream 122098 23278602 ~ 23283802 (-) True cfap45
XM_039782018.1 mRNA upstream 122099 23278603 ~ 23283179 (-) False cfap45
XM_039782060.1 mRNA upstream 132892 23289396 ~ 23291463 (-) True trappc4
TU25812 other downstream 7426 23139213 ~ 23148515 (-) True G18885
TU25813 other downstream 7426 23139400 ~ 23148515 (-) False G18885
TU25608 other downstream 1148770 22001904 ~ 22007171 (-) False LOC120551419
TU25499 other downstream 1484462 21664095 ~ 21671479 (-) False gdpd5b
TU25281 other downstream 1894018 21246839 ~ 21261923 (-) False slc6a4a
TU25890 other upstream 90099 23246603 ~ 23252420 (-) True G18948
XR_005641870.1 other upstream 572984 23729488 ~ 23758826 (-) False atm
TU26143 other upstream 667317 23823821 ~ 23827954 (-) True G19140
TU26301 other upstream 1091527 24248031 ~ 24252913 (-) True G19270
XR_005641049.1 other upstream 3150560 26307064 ~ 26334719 (-) False LOC120570356

Expression Profile