RNA id: TU25842


Basic Information

Item Value
RNA id TU25842
length 857
lncRNA type inter_gene
GC content 0.40
exon number 4
gene id G18911
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 23178636 ~ 23180583 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCGGGAGTGTTGGATCCTGAGATACATCAGCAATGATTTGTGTCAActcaTCAACCTCGTGGGTGATCTTGTTGACATAGATGCAGCTGTTGTCTGCCTCTTGTTGGTAGTCACAATTCCTGCACGCATAAAGCAGGATACGGTTCTCCTTGTCTTCTTTGGGGTATAACATGTTGTTACATTCTTGACAAAACCGTATTCCAACAAATCCTGGTTCGTACGTTCCAGGTTCTAAATCCATTAGAAAAACTATATGTTAAAGCAAAcctgaaaaataataaatgcgATTCCCTTCTTCTACCGCCTCTATGGCTTCCTACGCTCGTTTGAAAACAGaccgtcttcttcttcttcttctggctTTCCGGCAGACTAGAAGGCTTGCGGCAAATTGCTGCCTCTCACAGGACAGTTTAAGTAACATTCGAAAGTATTGTCAAAGTCAGTGGAGTAGTCCTGTTCTCAAATCTCAAATTGATATTCAGGGGGATTTAGTAAGAATCTCAATGTCATGTTTTATATTCCCATGTAACATAGCGCAGTGAACAACTGCTCTCTTTCATTTTTGTATTGAAGACAGTCCAAAAGTACATGTTGAacagtttgtttctgtttgcaGGTTCAGACTTTTTAATAATGAGGCTGTGAACATATGACCGCTCTCCTTtgcagtacttcctccacccaCTGTAGTGCCAAAATTATTATAGCTATTAGCTCTCTCTCCTTTGAGCTGTACAATTTCAAGTTGAGGAATATAAAAAGCAAAGCCCCACTTCCCAGTTTGTGGATCTTGAGATCCATCTGTGTAAATCTGAAGATATGTCTCCCAATGCTTACCCAGTCTTTTTTTAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25836 lncRNA downstream 2922 23175464 ~ 23175714 (-) True G18905
TU25824 lncRNA downstream 22132 23155941 ~ 23156504 (-) True G18896
TU25810 lncRNA downstream 40377 23137650 ~ 23138259 (-) True G18883
TU25794 lncRNA downstream 57702 23044749 ~ 23120934 (-) True G18868
TU25755 lncRNA downstream 362656 22815781 ~ 22815980 (-) True G18841
TU25856 lncRNA upstream 15085 23195668 ~ 23196344 (-) True G18923
XR_005636957.1 lncRNA upstream 36183 23216766 ~ 23234546 (-) True LOC120546850
TU25884 lncRNA upstream 52930 23233513 ~ 23236846 (-) True G18943
TU25908 lncRNA upstream 111158 23291741 ~ 23294502 (-) True G18963
TU25969 lncRNA upstream 166854 23347437 ~ 23351424 (-) True G19018
XM_039780884.1 mRNA downstream 9429 23162202 ~ 23169207 (-) True lbhl
XM_039780872.1 mRNA downstream 16558 23159296 ~ 23162078 (-) True LOC120546095
XM_039790989.1 mRNA downstream 296183 22875065 ~ 22882453 (-) True rbm7
XM_039821365.1 mRNA downstream 307046 22860951 ~ 22871590 (-) True barx2
XM_039788880.1 mRNA downstream 379624 22789044 ~ 22799012 (-) True LOC120551448
XM_039782027.1 mRNA upstream 98019 23278602 ~ 23283802 (-) True cfap45
XM_039782018.1 mRNA upstream 98020 23278603 ~ 23283179 (-) False cfap45
XM_039782060.1 mRNA upstream 108813 23289396 ~ 23291463 (-) True trappc4
XM_039779525.1 mRNA upstream 134475 23315058 ~ 23341092 (-) True sacs
XM_039779537.1 mRNA upstream 134475 23315058 ~ 23339355 (-) False sacs
TU25812 other downstream 30121 23139213 ~ 23148515 (-) True G18885
TU25813 other downstream 30121 23139400 ~ 23148515 (-) False G18885
TU25608 other downstream 1171465 22001904 ~ 22007171 (-) False LOC120551419
TU25499 other downstream 1507157 21664095 ~ 21671479 (-) False gdpd5b
TU25281 other downstream 1916713 21246839 ~ 21261923 (-) False slc6a4a
TU25890 other upstream 66020 23246603 ~ 23252420 (-) True G18948
XR_005641870.1 other upstream 548905 23729488 ~ 23758826 (-) False atm
TU26143 other upstream 643238 23823821 ~ 23827954 (-) True G19140
TU26301 other upstream 1067448 24248031 ~ 24252913 (-) True G19270
XR_005641049.1 other upstream 3126481 26307064 ~ 26334719 (-) False LOC120570356

Expression Profile