RNA id: XM_039825032.1


Basic Information

Item Value
RNA id XM_039825032.1
length 2131
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC120574680
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 23453547 ~ 23461044 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaaagtaaaagtgtttACCAATTGTTCCgctggttaccatgacaacctTGACAGTGTCTTTACAAAAAAGGCCCACCCGTTGATAAAAGGATTTAGCGTTAAtgagcacctagctagctaaatatTTACAACTTGTACCGTCAGCAGTGAGcaacaggagagaaaagagcaAGACTATTTGCGAGGAAAGAGTGGAGAAGACTATAAAGAAGTGATGAGTGTGAGGCGGCAGGGCGTGTTGCAGCAGGCCTTTGCTCACAGGGAGGGAGATGGTGATGCTGTGAGCTGCAGCACTGACACCTCTAGGTGGTCCTCTCCCCCCAGAGAGTGCTGTGGCTCTAATAGCTCACACTACTCATCTGACTTTGAAGACCAGGCTGACTCACTTACAGACAAGAACCCAGAAGTCAAGACATCAGACAAGCAGCAGGCATCAAAAACATGCGGAAGAAAAAAAGgtAAAAAAGCACAAGGGCCCCACAAGTATAAGACAAACAACAGTGCAAACCGGCAAGTCCTGAAGTTGCCGCCGATCAAGCCCATGCAGGTTTCAAAGTCTGCCGACTTGAACTGCATCAGGGAGCTGAAGAGCCAGGTGTGgcatctgcagcagcagctgggcGAAGCCAGGACTGAGAACAAGCTGCTGAAGAGGCTCCAGCTTCGCCACACGGTGGCACTGCAGCACTTCCAAGACTCTGAGGGCAGCCTCTCACAGATCCTCACCAAGCACAGCAACGAGGTCCGAGTCCTGCAGGGGTTGCTCCGTGAGACCCGTGCCTGCCGTGACAATCTGGCAAGGCAGCTAAAAACCACAGAAAATAAGTTGTTAAGCGCAAAGGCCAGTCTCCAGCACCTGCAGCTGCTCAGCCAGGATCACAGCCTGCTGGAGAGGGAGGAACTCACTTTCAGACTGACCAGGGCCTATGCAGAGCTAGAGGACAAGGACAAGAGGATATTGGACTTGGAGAAGAATGTTGAGTTGTGCCAAGCCTCATTCAATCGCCAAATGGTCACTGAACAAAGAAAGATCAAGGAGGCGAGAAAGATATCCTGCTATCTGCAAGAGCAAATATATCAGCTGAACAAGGAAATTCAAGATGGCAAGAGAAAACTGGAAACACACAATATTTACTCCAACAGATCTTCCAAAAAAGGCAGTGAAAGCAAGGAGGTTCAAACAGATGGATTAGTCCTTCTCCCGACTGCGGCTGCAAGTGTTTTGGAGTTAGAATATATGACTGAAGAAAGGCTGGAGGAGCAAGAGAGCTCTGTGAACTGGTGTTGTCACAATCCAGTGCAGGAGTCTTTGGTAATAGAAAAGCCAGAGACAGAGGTTCCTGCAAATGTCACATTAGAAGAGAATCGCCAAGAGTGTACTGAGACATGTGCAGACACCAGTGAGCATTGTGGTTCTTCAGAAGAGAGCCCAGAATATCAAACTGAGGAAGAaagtgacaaagaaaaagaggcATCAGAGGCCCCACGGGTGTTAGAAGAGCTAAAAACAGAGGAACATGAGAGTGAAACGTCATACATAGAAAAGTCTCTAAATGCAACTAAACCCAAAAGAAAAGGATACAAGCTCCCCAAAATCAGACACAACTACACCTATAAACAATCTATTGAGAACCTGCACAGCGGAAGACCTGCCTACAGCAGTGTGGACTTGAGTCCCTGTCAAAGTGCCAAGAGCCCGATCAAGTTGGAGACCCTCAGCAGTGGTATTCATGATCTTTGTCTACAAACTGAGAAATCCAGGAGAGATGGAGTCTGCAGCCCTCAGGACGAGTAAAGGGCATTCAAAAAACACATAGCAAGCTGATGAGGAACTCTTTGGACCGAGTAAAGTCACTGATTTAGTGACTATACGGAAGAACACAGCTGAGGTCAACAATGTCATCTTTACTAAAAGTGGATGAGGGAATTGTTTTCTGTAGTGGAAACAGAGTTTCTCATACTGAAGTATTTCTCTGAATGAATGATTGTTTGACCAAGAGCTACACACAGATCCATTGTAATCTATCTACTTTGTTTTAATTCTTTACAACTTTACTACAAGAAAATCTACCCAACTTGTTCTTGCTTGTGAATTCCCAACTTATAACATTTGAATAAATAGAAgcttata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25969 lncRNA downstream 105371 23347437 ~ 23351424 (-) True G19018
TU25908 lncRNA downstream 162293 23291741 ~ 23294502 (-) True G18963
TU25884 lncRNA downstream 219949 23233513 ~ 23236846 (-) True G18943
XR_005636957.1 lncRNA downstream 222249 23216766 ~ 23234546 (-) True LOC120546850
TU25856 lncRNA downstream 260451 23195668 ~ 23196344 (-) True G18923
TU25999 lncRNA upstream 4112 23464963 ~ 23471724 (-) True G19033
TU26000 lncRNA upstream 4112 23464963 ~ 23469720 (-) False G19033
TU26014 lncRNA upstream 104152 23565003 ~ 23565242 (-) True G19045
TU26125 lncRNA upstream 324387 23785238 ~ 23787687 (-) True G19126
TU26115 lncRNA upstream 341715 23802566 ~ 23803950 (-) False slc33a1
XM_039791476.1 mRNA downstream 4377 23449151 ~ 23452418 (-) True LOC120553253
XM_039792841.1 mRNA downstream 9964 23429356 ~ 23446831 (-) False brwd1
XM_039792833.1 mRNA downstream 9964 23429356 ~ 23446831 (-) False brwd1
XM_039792813.1 mRNA downstream 9970 23409820 ~ 23446825 (-) False brwd1
XM_039784440.1 mRNA upstream 113849 23574700 ~ 23693356 (-) False dscamb
XM_039784454.1 mRNA upstream 113849 23574700 ~ 23693355 (-) False dscamb
XM_039784432.1 mRNA upstream 113849 23574700 ~ 23693355 (-) True dscamb
XM_039784449.1 mRNA upstream 113849 23574700 ~ 23693242 (-) False dscamb
XM_039784463.1 mRNA upstream 152981 23613832 ~ 23693377 (-) False dscamb
TU25890 other downstream 204375 23246603 ~ 23252420 (-) True G18948
TU25812 other downstream 308280 23139213 ~ 23148515 (-) True G18885
TU25813 other downstream 308280 23139400 ~ 23148515 (-) False G18885
TU25608 other downstream 1449624 22001904 ~ 22007171 (-) False LOC120551419
TU25499 other downstream 1785316 21664095 ~ 21671479 (-) False gdpd5b
XR_005641870.1 other upstream 268637 23729488 ~ 23758826 (-) False atm
TU26143 other upstream 362970 23823821 ~ 23827954 (-) True G19140
TU26301 other upstream 787180 24248031 ~ 24252913 (-) True G19270
XR_005641049.1 other upstream 2846213 26307064 ~ 26334719 (-) False LOC120570356
XR_005641048.1 other upstream 2860089 26320940 ~ 26334719 (-) False LOC120570356

Expression Profile