RNA id: TU26115


Basic Information

Item Value
RNA id TU26115
length 1385
lncRNA type sense_over
GC content 0.40
exon number 1
gene id slc33a1
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 23802515 ~ 23809452 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCACATTCCTAATGAATCATTTTATTATTACCAATATCAATGGTTAAATGAACTGAGATGTCTAagatattaaatgtttttttgtagaagcaatcttttatttttccaaACGTTCCTTAAATCGGATTAGTTTTACCCGATATAGGACAAATTTGAATCTTTAATAGCAATATTGGACGGTGCAGCTTTAAACTGTTTAAACCTCTTGGTTATCAATGTTGGTAAATTGTTTTTGCTAAGGTATTTTTAAGTTGCAAGAAgaaaacaaattcaaaatataatatGCACactaaatttctttttttttaatcagactCTCCTGAAGTAGGTCTCGCAGCATTTTCCAGTTTTATTGATGCATTATGCTGTATACTAACTATGAATGCAACTATTTATTACAGGAGTCCTATAAGACCTTTTAACATCTATAAAGTCAAGTTTTGCAGTGTAGATCAAGAATCTCTCCGCGGATCCCAACTGAGTGGGACATTAACACCAGCctaaaaagtatgtaagtaattACATAGTGAATTTTTTGCCCTCCAAAAACAATTCAGATCCCAGCCTCAGTGAGAAATTTGATAAGAAGATATCCTGTTTGTTTTGCATATTGTACATAGAACTGAATGTTACAGTATTTTCTCTGAAGCCAGCATTGAAAGTCCAACTGCTGTCAAATGTAAATGTTGAAATACACAATCAGGGTTCATGTAAGGATAAAAGCTTAATTTGTAACTCATTTTGCATTTAGTAGTAATAGTTTCTGATGTCTTATACCAACTTTGTCAACCACATGTAAAAGGTCAAACATTTTTAGATTACCATGGTAGCAGTTGTCTGAAATGCACAGAAGTTCCTTTATACTGCACATTAATGAATCAGTTTAGTTCACTTTATACTACATGACTTTGCTTTGATGTTTATTGGGCATTTCATTTGTATTTGTACCAGCATATCACTGTAATATGACCATAGAAAATATGACTCGTTTTCCTGTGAACCTTTTTGCCATTAACAGGGCACcatatttgttttgattttctttGACAAACATTAGACAATGTGACCGTTGATTTCAGCTATATatgaatttgtttttatattttagatcaGGGTTTTTACTTTACTCTGCTAAATTGGCTTTTAGGTGGTAGTaaactgttacttcagaatttCAGCAGCAGGAAGTTCAGTGTTTTAATTTATCTCACAATGTTACCTCATATCCTTTAATTGATTtcttttgaattgaattttttttttttactttgaacaATTTTAGTTTGAATCCAAATCCCCAATCATATAAAAGAGGATAGCACAGGGTGACAGTATCTTGAGAAATTTCAATATGCTAGCAGCAGACAACTTTGACACTCATAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26125 lncRNA downstream 14879 23785238 ~ 23787687 (-) True G19126
TU26014 lncRNA downstream 237324 23565003 ~ 23565242 (-) True G19045
TU25999 lncRNA downstream 330842 23464963 ~ 23471724 (-) True G19033
TU26000 lncRNA downstream 332846 23464963 ~ 23469720 (-) False G19033
TU25985 lncRNA downstream 341522 23453547 ~ 23461044 (-) False LOC120574680
TU26139 lncRNA upstream 13615 23817565 ~ 23818438 (-) True G19137
TU26163 lncRNA upstream 180121 23984071 ~ 23984458 (-) True G19158
TU26205 lncRNA upstream 222268 24026218 ~ 24026684 (-) True G19189
TU26207 lncRNA upstream 224677 24028627 ~ 24031253 (-) True G19191
TU26240 lncRNA upstream 361128 24165078 ~ 24165298 (-) True G19224
XM_039790983.1 mRNA downstream 9590 23788779 ~ 23792976 (-) True tubd1
XM_039824880.1 mRNA downstream 43740 23730503 ~ 23758826 (-) True atm
XM_039784463.1 mRNA downstream 109189 23613832 ~ 23693377 (-) False dscamb
XM_039784454.1 mRNA downstream 109211 23574700 ~ 23693355 (-) False dscamb
XM_039825265.1 mRNA upstream 156804 23960754 ~ 23964467 (-) True ssr3
XM_039825785.1 mRNA upstream 387521 24191471 ~ 24281835 (-) False veph1
XM_039825802.1 mRNA upstream 387521 24191471 ~ 24279119 (-) False veph1
XM_039825778.1 mRNA upstream 387521 24191471 ~ 24279119 (-) True veph1
XM_039825795.1 mRNA upstream 387521 24191471 ~ 24279118 (-) False veph1
XR_005641870.1 other downstream 43740 23729488 ~ 23758826 (-) False atm
TU25890 other downstream 550146 23246603 ~ 23252420 (-) True G18948
TU25812 other downstream 654051 23139213 ~ 23148515 (-) True G18885
TU25813 other downstream 654051 23139400 ~ 23148515 (-) False G18885
TU25608 other downstream 1795395 22001904 ~ 22007171 (-) False LOC120551419
TU26143 other upstream 19871 23823821 ~ 23827954 (-) True G19140
TU26301 other upstream 444081 24248031 ~ 24252913 (-) True G19270
XR_005641049.1 other upstream 2503114 26307064 ~ 26334719 (-) False LOC120570356
XR_005641048.1 other upstream 2516990 26320940 ~ 26334719 (-) False LOC120570356
TU26817 other upstream 2516992 26320942 ~ 26334687 (-) False LOC120570356

Expression Profile